Paka009681.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031469.1:12772515-12775430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.35 17 5.8 0.7 1 23 171 194 171 194 0.94 2 17 0.24 12 6.4 0.2 3 22 235 254 233 256 0.89 3 17 0.64 31 5.0 0.3 1 23 307 330 307 330 0.95 4 17 7.5 3.7e+02 1.6 0.0 2 21 371 390 370 393 0.76 5 17 0.24 12 6.4 4.6 1 23 444 467 444 467 0.98 6 17 1.8 90 3.6 0.2 3 23 476 497 474 497 0.92 7 17 0.28 14 6.1 0.0 1 23 506 529 506 529 0.94 8 17 0.07 3.4 8.0 2.3 1 23 565 588 565 588 0.93 9 17 0.17 8.5 6.8 5.1 1 23 592 614 592 614 0.94 10 17 0.002 0.099 12.9 0.4 1 23 630 652 630 652 0.95 11 17 0.66 32 5.0 0.6 1 23 687 709 687 709 0.94 12 17 0.056 2.7 8.3 0.6 2 23 721 743 720 743 0.92 13 17 4.8e-06 0.00024 21.1 0.4 1 23 749 772 749 772 0.95 14 17 0.00014 0.0066 16.6 1.5 1 23 780 802 780 802 0.97 15 17 0.007 0.34 11.2 0.0 1 21 808 830 808 831 0.94 16 17 0.0084 0.41 10.9 0.7 1 23 868 892 868 892 0.96 17 17 0.00086 0.042 14.0 0.5 1 23 898 922 898 922 0.98
Sequence Information
- Coding Sequence
- ATGGATCTGAGTCAAATATGTCGCTTATGTCGTAGACAATGTGATCCATGTGCTAATTTGATAACGCTTAGTGGCTATCGTAGTGACGTGAAAATAGTGGAACTAATTGGAAAAGTTTGTTTTGATGTGAGTATTGAAGAATTTGATGGTCTTCCTCAGCAAATATGTGAGGAATGCTTGGAAATCCTAATTAGCGCTTATCGTTTGCAACAAGAAAGTATCAAAAGTGACGAATACTTTCGATCAAAATACTCTGAACCGGAAGTAAAAATTAAGCAGGAAACATTGGAACTTCTGCAAGCAATTAAAGTGGAGGAAAAAGAGCCTATTGAAGAACACCTCTTCGTTGAAACATTTGCAGAACCAGTAACTAACAGTTTTCAGGTTGGTCTAATCGAAAGTGACGAAGATGATTCGCAATATATTGAAGACTCGGCCAGAAAGTTCAAAGGTCCATTATCAGCTCGCGCTCTTCCAGGTTCAAGTGGACTGTTGTATAAGGATGTCTATTATAAATGTAATTTCTGTTCCATTGAGCTGAAACCTCGTTTGAACATGATGCGACATTTGGAGTTGAAACACGATCCAATTCTAAAACCGTATGGATGCAAATTCTGTTTATTACGATTTGACGAAGAATCCAGGCAAAAAATTCATGAGGAAGAGAAACATTTAGATGATGAACAACCAGCTATTATATTTTGTAAGCAATGCAATGCAAGCGGAAATAGCTCAGATGGAATGAAACGCCATATAGTTGATGATCATGCCGAGAAGATAGTAAACCGTTCGACCAGTGACCCAATGGAATCGGAATACGATGAAGAAGAGGAAAGTGATGAACATAAGAAACGTTTTCGCTATATACCCTTCAAGCCACGAGCTTTAAATGAATCGACAAACTATGAAGAAGTTTGGTATATATGCAGTTTTTGCCCAGTTAAGCTGAAACCACGCAAAGTTATGTTGCGGCATATGAAGGAGCTGCATGATCCAAAGAAAAAACCTTACTTTTGCCAATACTGTATTCAACGATTTAAGTCGGACAATGAGCGTATCAAGCATAAAAAAAAATTTCACTCTAATGCGAAACAAAGACAATCAATTTTAATTTGTGATATTTGTGGAGCTACTGGAAGTAGTGCTGCTGGAATAGTGTATCATAAAGCTAATGATCACTATGTCACAGCTGAAGAAGAAAACATTAAAAATGAAATTGAGGTAGTAGATCATTCCATACCGGAAATAAGAATAAGACGAAAAAGTGAAATATTATTCCACCCACGACCAGTTGAAGGATATGAACATTTATCAAGGGATGAAATTCTTTATCAGTGTAATTTCTGTGAGAACCAATATCACACGCGTAGCAAAACAGTGCGTCATATCAGAAGTCAGCACGATCCAATAGACTTTCCGTTTGGTTGCCAATTTTGTATTCAGCGTTTTGCAAGTAGCGCAGAATTGGAATATCATGAATCAAGTTCCCACGACAATGAAGCAATTCCCACTATTTTTGTCTGTCCTACTTGCAATGTGAGTGGAGATAATGCCCAAGGAATGAGCAATCACATAAATGATGATCACGAGAATGTCAGTAAATATGAGTGTGATAGATGTGGATTTTTATACCTTCACAAAAAGCGTCTTATATCGCATTTTAAAAAAGAGCATCTTAAAGAAAATCCAAAGTTTTACTGTTTTGAATGCAAAATTGGTTTCAAATCATGGAGTAGTCATCAAAAACACAATAACATTGCACATCAAGGGGATTTTCGATGTCGTCACTGTACGAGTTTCTTTAAGACAAAGAAAGAGATGAAAGTTCATTCGATATTGCACATGGACCTCATTCGCCCTGTAGAACCTCATGAGATTGTACAAGAATTCTTGTGCGTAATTTGCCAACAAGAATATAGTAGCAAAAAAGAAGTTATCAACCACATGCAGTCTCATGAGTCTAAATTTGGATACGGCAAGTGTATCATGTGCCCGGCTAGAATGAAGACCTGGACAAATGCATTAGATCATTCGAGTTATCATTGCCAGCCCAAGACGCACGAATGTCTCTCCTGTAATCGTAAATTTCCGATGGATGAGAAACTACTTTTACACGTTCAAGGACATGAAAATCGAAAAAAGCCAAGTTATTACTCAATTATGTGTAACAAGTGTGGAACAAAATGGCGATCATCGAAGGATCTTGAAACTCATGAAAAGGCGAAACATCAAAATTTGACACTCTTTGTTTGTCCCACTTGTGGAAAATCATTATCGTCGGAGAATAATCTTAAGCAGCACATGACCTACGTACATATGACTGAAGAAGAGAAGAAATTTGAATGTAAACTCTGCTCGCGCCGCTTCCCTAATAAATTCAAACTTAATCGTCATGAGATTATACATAGCAGTGCTCGGCCATATGTCTGCGAGGTGGAAGGATGCAATGCATCATTCAAACAACAAGAAGGTCTCGCGCTACACACAAAACGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAATCATATGCTCACTCATACGGGAGCAAAACCCCATGAGTGTGAGTACTGCACTGATCGTGCTTATGCATCGAAAGGAGATCTCATGAAACACTTGCAAAAAGTTCATCTTGGCGATGCAATCTATAAATGTAACATAGAAGGATGTACGCAAGCTTTCCGACTGAAGGTTCAGTTGCAAGAGCACTACAGAGATCACGCAAACTAA
- Protein Sequence
- MDLSQICRLCRRQCDPCANLITLSGYRSDVKIVELIGKVCFDVSIEEFDGLPQQICEECLEILISAYRLQQESIKSDEYFRSKYSEPEVKIKQETLELLQAIKVEEKEPIEEHLFVETFAEPVTNSFQVGLIESDEDDSQYIEDSARKFKGPLSARALPGSSGLLYKDVYYKCNFCSIELKPRLNMMRHLELKHDPILKPYGCKFCLLRFDEESRQKIHEEEKHLDDEQPAIIFCKQCNASGNSSDGMKRHIVDDHAEKIVNRSTSDPMESEYDEEEESDEHKKRFRYIPFKPRALNESTNYEEVWYICSFCPVKLKPRKVMLRHMKELHDPKKKPYFCQYCIQRFKSDNERIKHKKKFHSNAKQRQSILICDICGATGSSAAGIVYHKANDHYVTAEEENIKNEIEVVDHSIPEIRIRRKSEILFHPRPVEGYEHLSRDEILYQCNFCENQYHTRSKTVRHIRSQHDPIDFPFGCQFCIQRFASSAELEYHESSSHDNEAIPTIFVCPTCNVSGDNAQGMSNHINDDHENVSKYECDRCGFLYLHKKRLISHFKKEHLKENPKFYCFECKIGFKSWSSHQKHNNIAHQGDFRCRHCTSFFKTKKEMKVHSILHMDLIRPVEPHEIVQEFLCVICQQEYSSKKEVINHMQSHESKFGYGKCIMCPARMKTWTNALDHSSYHCQPKTHECLSCNRKFPMDEKLLLHVQGHENRKKPSYYSIMCNKCGTKWRSSKDLETHEKAKHQNLTLFVCPTCGKSLSSENNLKQHMTYVHMTEEEKKFECKLCSRRFPNKFKLNRHEIIHSSARPYVCEVEGCNASFKQQEGLALHTKRXXXXXXXXXXXXXXXXXXXXXXXXANHMLTHTGAKPHECEYCTDRAYASKGDLMKHLQKVHLGDAIYKCNIEGCTQAFRLKVQLQEHYRDHAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -