Paka008089.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031469.1:3169553-3171856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.04 2 8.8 0.7 1 23 218 241 218 241 0.96 2 12 0.052 2.5 8.4 0.3 2 23 290 312 289 312 0.96 3 12 0.15 7.4 7.0 1.3 2 23 366 388 365 388 0.95 4 12 0.24 12 6.4 4.4 1 23 399 421 399 421 0.96 5 12 2.1 1e+02 3.4 1.0 3 23 436 456 435 456 0.95 6 12 0.13 6.2 7.2 4.3 2 23 498 519 497 520 0.94 7 12 1.2 58 4.2 0.4 2 21 559 578 558 579 0.93 8 12 0.00038 0.018 15.2 5.3 1 21 585 605 585 606 0.95 9 12 0.0005 0.025 14.8 4.1 1 23 613 636 613 636 0.92 10 12 6.2e-05 0.003 17.6 0.1 1 23 642 664 642 664 0.97 11 12 6.8e-05 0.0033 17.5 1.4 1 23 669 692 669 692 0.97 12 12 0.003 0.15 12.3 5.5 2 23 705 726 705 726 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAAAAAAATTGTATTTTTTGTGGAAAATCGAAATCTGATCAGCTGATTGAGATGAGCACAAACTCTCTTATCATAGAATCCGTGTACATAGATTTCAATCAACTCATTTACGACTTGTTTCAACAGAAGATTGAAGACAGCCCCAGCAACGTAATTTGTATTAAATGCAAGGATCTATTGTCAGAACTTTATGTATGGAAACAAAAAGCAATCCGCATTTTCAATCCTCATGATGAGCAGAAAAAAATCATTTTGCATGAGGTATCAATTTTTCTTGATGGACTCTCGGAATCAAAGCTCATTGTTTCAAGGCGTCATGAATTTCTCGCAATCCATCCCGAATCACAAAAACCTATGTTCGATGAAGCATTCAAACACTGGAAGCATGAGCCAAAAGAAGAAACAACAACAATTCATTTTGAGACTGATGTTTGTGACTTGGAAACCAAAGACGAGATTGAGAATGTGCTTGAAGAGTATGGAGAGTATTCACCCGAAATTTGTGAAATTGCTTATGAGTCTCCAGAAATTATCAACTATAAGGATGACGACGGATCCGATTCAATCATAACGGGTGAAACTAAGGGCGACTGGCTTAGGAGGAAAATCAGAGAAAGCAAATCTGTCGTCGAGGCCATCATTCGATACAATTGCTGGTCATGTGATTCTTCATTTCTGAATGCAAGCAGTTTAAGAGTGCATTATCTCAAAAAACATGAAAAAGAAAAGATTGCGCCAAAAAATCATCCAAAAAGATCAAAGGACACCACACTTACTGAAGAACAGAAACTTTTCCTTAAGAATGAAGTCCTTGATCGACGAGTTATCATTGAATCAACACATGGACCGAAATACATGTGGAAGTGCCGTGAATGTGATTTTACTGGCGTTTCTGACGTCAGCTTCCGCATCCACATGAAAAGAGAACATCTTTCATCGATCAACTTTAATAACTGCGTTGTCACCGAAGAATCCAATGAAATATGCGAAGATGACCGCGACATTGTTGAACAAAAGCTTTGGGTGCGCGAACAGGTTATTCGTCAAAAACAAATGACTCAAACAGCTGACGGACCAAAAATGGTCTGGACATGTTCGCAATGTTCTTTTTCAAGTTCAAATCGCGGCAGATTCAGAATTCACGTTCAACGGAATCACACCAATCTGCTGACTAAAGGACCCAACAAGCATTCTTGTCATGAATGTCGTCTTCGATTTGACGGCGAAAATCATTTGGTTGTACACAACAATTCGCATAAAATCTTTGATCTGACAGCACCGTATGCGATTTATCCTTCATGTGCAGAGTGTAGAATGTTTTTCTGTGCTGATACAGATCTGCTCATACATGAAAACAGACATTCAGAGAATCCTGAACTCTTGTTTGACGCTATGCCTTGTGTTGGCGTTATGCAAAAAAATGGCGAAGTCTTCATGAGTGTCAGTGACGAAATAGTAAGAGACGTTCCCGATGAAATTGCTGTACGATGTGGACATTGCTTGCGTACATTTGGATCAGAAACGGAAGTAAAACATCATCTCATGCTTCATCATTGTAAATCATTTGCATGCCCATTCGATGGACGTGTTTTTAACGGGATCCCAACTCTGTCTTACGGAATTCATTTACGTCAAATCCATCCGGAAATCTTTCCGGATTTACGGATTTCCTGTAGCTTCTGTAGAATGGATTTCGAAACCATTTACTCTAAGCTTAAACATATGAAAATATGCAAAGAAAAACAATACTGTTGCGATCATTGTGGTAAATCATTCTTCAAAAAAACTGAGCTGTTGCATCATCTGAAAGTCGTTTTGGGCTTGACAGTATTCGCTTGTCATTACTGTGGAAAGAGCCATTTCAAAGATCAAGGGGATCTTAAAACCCACATCCGGTCACATACAAATGAGCGACCATACCCATGCCCTATTTGTCCAAAAACTTACAAAACTTCTTCAGCTCGCGCATCACACGTCGAAAGTCATATGGACGCTGCGTATGAATGTAGTGTTTGTCAAGTAAAATTCCGGCGGCGCATTTTGTACCAACGTCATATGAAACTCCTTCATGATGAAACTTACAGGAAAAAGGCATTCGAGGAAAACACATGCCGCATCTGCAATAAATCTTATTTGCGCCGGTCTCATTATAAAAATCATTTGAAAACACACATAACGCTTTAG
- Protein Sequence
- MEQKNCIFCGKSKSDQLIEMSTNSLIIESVYIDFNQLIYDLFQQKIEDSPSNVICIKCKDLLSELYVWKQKAIRIFNPHDEQKKIILHEVSIFLDGLSESKLIVSRRHEFLAIHPESQKPMFDEAFKHWKHEPKEETTTIHFETDVCDLETKDEIENVLEEYGEYSPEICEIAYESPEIINYKDDDGSDSIITGETKGDWLRRKIRESKSVVEAIIRYNCWSCDSSFLNASSLRVHYLKKHEKEKIAPKNHPKRSKDTTLTEEQKLFLKNEVLDRRVIIESTHGPKYMWKCRECDFTGVSDVSFRIHMKREHLSSINFNNCVVTEESNEICEDDRDIVEQKLWVREQVIRQKQMTQTADGPKMVWTCSQCSFSSSNRGRFRIHVQRNHTNLLTKGPNKHSCHECRLRFDGENHLVVHNNSHKIFDLTAPYAIYPSCAECRMFFCADTDLLIHENRHSENPELLFDAMPCVGVMQKNGEVFMSVSDEIVRDVPDEIAVRCGHCLRTFGSETEVKHHLMLHHCKSFACPFDGRVFNGIPTLSYGIHLRQIHPEIFPDLRISCSFCRMDFETIYSKLKHMKICKEKQYCCDHCGKSFFKKTELLHHLKVVLGLTVFACHYCGKSHFKDQGDLKTHIRSHTNERPYPCPICPKTYKTSSARASHVESHMDAAYECSVCQVKFRRRILYQRHMKLLHDETYRKKAFEENTCRICNKSYLRRSHYKNHLKTHITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -