Paka001019.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031470.1:4137048-4138568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0034 0.17 12.1 0.9 2 23 163 185 162 185 0.93 2 10 0.49 24 5.4 5.0 1 23 191 214 191 214 0.95 3 10 0.00073 0.036 14.3 0.9 3 23 227 248 226 248 0.97 4 10 4.5 2.2e+02 2.3 1.4 1 23 254 277 254 277 0.91 5 10 0.048 2.3 8.5 1.0 1 23 286 309 286 309 0.95 6 10 0.0013 0.063 13.5 2.3 5 23 318 337 315 337 0.94 7 10 4.1e-05 0.002 18.2 0.3 1 23 343 366 343 366 0.96 8 10 0.00016 0.008 16.3 0.2 3 23 374 396 372 396 0.92 9 10 0.00018 0.009 16.1 1.9 1 23 401 423 401 423 0.97 10 10 0.00027 0.013 15.6 2.2 1 23 428 450 428 450 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTAGATTTAGATAGTTACATTTCACGGTGTCGATTCTGTCTATCTGAGCAAAATGCTGAATGTGATTTTAAAGAAATTGACAAGAATGTTGAGAATGTTTTCTATGATTTAACTAAATTGAGGCTTAAATCTTCAGAAGCATTATCATCATTGATTTGTAGGATTTGTTGTTCCGAATATGATCGAATAGAAATATTTAAAAGTCAATTGATCAGGAATCAAGTTTTCCTTGAAAACTTAGTTGATAGTTTCCCCAAAACCCAAAAAGATGCAACTTCGGAAGAAAATCTGAAATTGGAAGCTTTTGATTGTAAATTTGAAAATGAATTCGAAATCAGCCAAATAGAAGACCGATCTGTTTTTATTGAATCTTCTGATGTTCTCAGTTCGGAAGAGAAATATCCTGATGTAAAAACAAGACATAAAAGGACCGATTTTAAACGAAAAAGGAATACAACCAAAGAAGACTTTCCAGACAAAACATGTCCCATATGTAAAAAGACATTCACTGAAAAAAGAAAAATACCTTTACACATACGACGAATTCATGTCAAAATCAAGGATTTTCATTGTGATCACTGCGATTATTCGGCACATACAAAATTTGATATCGTGAGACACGTTAAAAACATTCATATGCCCGTACCAGAGAACCCAACAGATTTAAGAATTTGTCCACATTGCGCAAAAGTTGTAAGAGGAAATAATCAATTAACATTACATATAAGAAAGAAACATCTGAACATTAAGAAGTTTCTCTGTGACATGTGCTCATTTGCATCTTATGGTAAATATGAGATCAGATCCCATTTGCAGCACATGCATATTCCGAAAGAGTTCAAGGAGTGTCATCCCTGTGGCCTCTGCGACTCTATTTTATCATCATCAATGGGTCTGAAGGTTCATATGCAACACCGACATTCTGGCGTACGTCCACACAAATGTTTCTGTGGAAAAGCATTCTCGCTCAAAGAAACCCTTAAAACTCATATAAGAAATGTTCATAAAGGCGAAAGAAGGTATCCCTGTCCGAGCTGCCCAAAACGATTTAACCAGTCGGTCAGATTAAGAGATCACATTAATAACAATCATGGAACAAAGCAGGAAATACCATGCACATTTGATAATTGTGGGAAAGTATTTGGATCAACCCGAAATCTCAAAGCACATCTTATTTATCATTCAGAGCCAAAATATGCATGTAATAACTGTGATAAGAAATTTTACCTTTCCAACAAACTGAAAGAGCACACAAAAATTCACGAGGGTCTGGAGCATCCTTGCCTTTATTGCTCCAGAAGCTTTCAACTTGGATCGTCACTCAAACGTCATATGAAAATTCATGTTAAATCAGAGCTCGATGATCAATTTGTGGACATGACAGTATAG
- Protein Sequence
- MSLDLDSYISRCRFCLSEQNAECDFKEIDKNVENVFYDLTKLRLKSSEALSSLICRICCSEYDRIEIFKSQLIRNQVFLENLVDSFPKTQKDATSEENLKLEAFDCKFENEFEISQIEDRSVFIESSDVLSSEEKYPDVKTRHKRTDFKRKRNTTKEDFPDKTCPICKKTFTEKRKIPLHIRRIHVKIKDFHCDHCDYSAHTKFDIVRHVKNIHMPVPENPTDLRICPHCAKVVRGNNQLTLHIRKKHLNIKKFLCDMCSFASYGKYEIRSHLQHMHIPKEFKECHPCGLCDSILSSSMGLKVHMQHRHSGVRPHKCFCGKAFSLKETLKTHIRNVHKGERRYPCPSCPKRFNQSVRLRDHINNNHGTKQEIPCTFDNCGKVFGSTRNLKAHLIYHSEPKYACNNCDKKFYLSNKLKEHTKIHEGLEHPCLYCSRSFQLGSSLKRHMKIHVKSELDDQFVDMTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -