Paka012780.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:2340247-2344219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.016 0.78 10.1 4.1 1 23 11 33 11 33 0.95 2 23 0.00018 0.0088 16.2 1.4 2 23 40 61 39 61 0.97 3 23 0.00038 0.018 15.2 0.7 1 23 69 91 69 91 0.98 4 23 0.27 13 6.2 1.2 5 23 97 116 96 116 0.93 5 23 0.0014 0.068 13.4 8.2 1 23 151 173 151 173 0.97 6 23 0.062 3 8.2 0.5 1 23 210 233 210 233 0.93 7 23 0.0088 0.43 10.9 1.5 1 23 238 261 238 261 0.96 8 23 0.0028 0.14 12.4 1.0 1 23 276 299 276 299 0.96 9 23 0.00057 0.028 14.6 2.1 1 23 305 328 305 328 0.95 10 23 0.039 1.9 8.8 0.1 1 19 341 359 341 362 0.87 11 23 0.14 6.6 7.1 1.2 1 23 618 641 618 641 0.92 12 23 0.24 12 6.3 3.1 1 23 654 677 654 677 0.95 13 23 0.9 44 4.5 5.1 1 19 755 773 755 778 0.93 14 23 0.037 1.8 8.9 4.8 1 23 783 806 783 806 0.97 15 23 0.00026 0.013 15.7 6.8 2 23 826 848 825 848 0.94 16 23 0.039 1.9 8.8 4.3 2 23 856 878 855 878 0.94 17 23 0.33 16 5.9 0.3 2 23 962 984 962 984 0.94 18 23 2.9 1.4e+02 2.9 1.0 2 23 1021 1042 1020 1042 0.93 19 23 0.046 2.3 8.6 5.3 1 23 1051 1073 1051 1073 0.98 20 23 0.0024 0.12 12.6 1.5 2 23 1080 1101 1079 1101 0.95 21 23 0.0048 0.24 11.7 0.6 1 23 1107 1131 1107 1132 0.95 22 23 0.078 3.8 7.9 0.5 2 23 1138 1160 1137 1160 0.91 23 23 4.3e-05 0.0021 18.1 1.3 1 22 1166 1187 1166 1190 0.90
Sequence Information
- Coding Sequence
- ATGGAGCGCTCTGGTGAAAACAAAGTTGATTACGTTTGTCACATATGCGCAAAATCTTATACAAGCAAATTCAATTTTGACTATCATGTTGCTCATCACAGCGATGAAAGGCCATGGCAATGTGAATACTGTTCAAATGCTTACAAAACAAAATCTGATTTGAATCAACATAAGAAATCCCATGAACGAGAATTAAATTTGAAATTCACTTGTAAGTTTTGTAATCTGCTGTATGATAACAGCACGGCCTTGAACGTACATATGCGAATACACCGGAACGTTTCAAAATGGTGCGAGGTGTGTTGTAAGGATTTCACAAATTTGCGGTCACACCAGCAGATTGTTCATGAGAAAATTAAGCCATACAGCTGTGACCTCTGCTGCAAAAAATTTGGAAAGTTCAGTGGCTGTCAGCGACACCTTCTAGCTGTTCATATGAATATAAGGGAATTTGCCTGCAACACATGCCACAAGGCCTTTAAAGAGAAATGTGCTCTAACTAAGCACATGAAGCATCATTTGAAACTGGATGAAAGAATCCATCGGAAGATCTACACTCGGAAAATCAAGAGCATTGTTTATGATAACGAAAGTGATGATGAAGAACTTTTGACTGAAAAGGAATTTTTCAAATGTCAATTATGTTCTCGAGTTTTTTTATCACTAGATAAACTTATTCAACATGAAAATGAAAATCACATCGGATTAAAGTTTAATTGTGATTTCTGCAATCGAAATTTTTCTTCAAAACTGAAGATAAGTCGCCACATTATAAAAGTTCACATTCTGAATCAGTCTGGAAAAATTACTGCGAGAGTGAAGCAATTTCGATGTGGACTCTGCAAACAAATTCTTAGCTCAAAGTCTGGTTTAATGCGCCATAAGAAATACATTCATTCAAACATCTACGAATTTCTATGTCATCAATGCTCAATGCCATACCGCGATAGAAGTGCGCTCGAAAAGCATCTCCAAAGATTTCATAAAATTGAATTATCAAAACCAGAAAACGGCCAAACATTTGACTGTCCAGTATGTGATCGCCGTTTTGCGACTCATCTTGCATTATCAGGACATGAGGAAAAGTGTCGATTGAAGCAGCAGGAATTGTACAATCGTGAGCTGGATAAACAGGCTTTACTTGATGGAGGAACATATCAGAAGCATCGAAAAGTATCTGTGGAGTCAGAATATGATGCAACGTCAACAAAGCTCCTTGATTATATTAAATCTGAACCCGAAGAAATTATACTTGACGAATTAGCAATGCCATATTATCCATCGATTGAAGATAGTGAAGAAATTTCAGTATCAGTTAAGCAGGAAGCAATGGACTCTTCGCTGGTAACAGCTTTTGATTTTGAAAATGTTACAATCAAGGAAGAATTTGATCCAATCGAGAATTTTGACATTCAATCGTTGACAGTTAAACAGGAGGGTGAAACAATTGATTTGGCGGATTCACTTGCAGAGACAAGCGGAGAGATGGTTACAATGAAGGATTTTTTGCCAACTGAATTTGATACTAATCGAGAAGATAATGACGTAAGATTGGAAGATCTTTTCAATTTCGATGAGACAGAAGTTATTATTCTGAGGGATCCGCCACAAGCATCGGAACCTCCATTGAAGTTAATGAAATTGGTCACTAAAATCAGGTGCAAGCTATGTCCCGATATGAAATTTGACATCAAAGCTGATTTTCTTAAACATTTCAATGAATTTCACATCACAAATATTCGGCATGAAACTCTAAATCCTACAAAACTATTACCAGCACAAAGTCTAAATTCACATAAAGAACCAACTCGATCTGCCGCAAACGAAAAAAAGGATTTGTTTACCAAAAAATTTAGATGCAAAGTTTGTTTGCAGCTTTTTAATACACAAGAAGATGTTTTAAAGCATTATTCCGACAAACATGTGCCTACAATATCAACACATGATAACGACAATAAATTCCATTGCAGCTATTGTAGCAGTAGCTTTGACAATGATGTTGATCTGAAGTATCACTTTAATTCGATGCATAAGAAACAGGAAGATTCTAATAGTTCCGACGCTGGATTGAGAGAAAAGGAAAGAAATGGCACTTTAGTTTCGGTTTATCGCCGAAGAAAAAAGACAGCAATGTTAGAGATAATTCCTAAGGGTGATGATATGGCAGAATCGGAAGAATCAAGTGAAGGTGAACCAGAAAATATTGACGAATCCTTGATCTCGGATCTTTTTAAAGGAAGCACTTATGATCGCTTTAAAAAATATTGTTGCAATCTTTGTACAGAACATTTCAAGGATCTACCAGCACTGAGAACACATTGCGTGAAAGTTCACCGCATCAAACGCTTTAAATGTGCATATTGTAACCATTCATTCAATGATCGAATGCGTATGAGAACACATTGGAACAAGAAGCACACCGAAATGTTGTACAAATTCAAAAAAAGGATATTTCCAATTCCGAATGAAGATATTAAATGTCACTTGTGTAGTAAGACATTTTGTCATAGTGTCTCTCTTACACGCCACATGTCGCTGCTTCATAATGCAAATCGATTAGTTCTTTGCTGTACCCATTGTTCTTCAACATTTTTTGATCCGCGCGGCTTAAAGAAGCACATCGATCGAATGCATAAAGGAATTCCAGCAGAGAAAAAAAGACAACCTCGCAAGACGACAGTTTACGTTCCATGTGAAATTTGCAATTTCAAGTTATTGGGATTAAGAGAGCTCAACGCACATCGTTGGGTTGTACATTATCATGTCCGACCAATTAGAAAGAAATATTTTGAATGTTTGATATGTTCACAAATTATAAAATGTAGAATTTCAGCCAGGCGCCATTATAGCTTAATTCATGAAAATGGAAAGAAGATGTTCCGAAAATGTCAGGATTGTGTCATTGAATATAGATTGTATGATGACTTCAAGAAACATGTTGATGTTCAGCATCAAAACGGTTTCATTTGTTTGACTTGTGGCATGAATATGCAGACAGCTCATCGTCTTGTTAGACATAATCTCGAACATAAAGCCGTTCCAGATGAGTTAAAAGTTCTCATGTGTGATCTTTGTGGTTTTCGAGCGCAACAGAAAAAGACAATTGAAAGTCATATGGTTCATCATGGCGCTGCTAAGAAAATTCAACATTACGCATGCGAGTTCTGTGGATTTCATTTCACCAATTACCAAGGTTGGCATACTCATCGAAAAACTCATCTACCAAAGCCACGAGTTCCATGTACATATTGTGGAAAATGTTTTTCATCAGATCTTGAAAAAAGAAATCATGAGCGCATTCACACGAACGAATGTCCTTATGTATGCAAAGTGCCGAATTGCGGCAAAAAATTTATATCAGTAGGCGCAAGGAGCGCACATCGAAGGAGTCATCACGATCAGAATAGGAGTCAATGTGTAAAGTGTCTAATAAATTTTACGTCAAAGCAAAAACTGCTTCGACATGAATTGGAAATACATCCAGAGTTTCGTCGCTTCGTTTGTCGAGATTGCTTTAAAGCTTTCAGAACTCCCGCCAATCTAGAACGACATGTGGAATCATGTCAGCATAGCACTGCATAA
- Protein Sequence
- MERSGENKVDYVCHICAKSYTSKFNFDYHVAHHSDERPWQCEYCSNAYKTKSDLNQHKKSHERELNLKFTCKFCNLLYDNSTALNVHMRIHRNVSKWCEVCCKDFTNLRSHQQIVHEKIKPYSCDLCCKKFGKFSGCQRHLLAVHMNIREFACNTCHKAFKEKCALTKHMKHHLKLDERIHRKIYTRKIKSIVYDNESDDEELLTEKEFFKCQLCSRVFLSLDKLIQHENENHIGLKFNCDFCNRNFSSKLKISRHIIKVHILNQSGKITARVKQFRCGLCKQILSSKSGLMRHKKYIHSNIYEFLCHQCSMPYRDRSALEKHLQRFHKIELSKPENGQTFDCPVCDRRFATHLALSGHEEKCRLKQQELYNRELDKQALLDGGTYQKHRKVSVESEYDATSTKLLDYIKSEPEEIILDELAMPYYPSIEDSEEISVSVKQEAMDSSLVTAFDFENVTIKEEFDPIENFDIQSLTVKQEGETIDLADSLAETSGEMVTMKDFLPTEFDTNREDNDVRLEDLFNFDETEVIILRDPPQASEPPLKLMKLVTKIRCKLCPDMKFDIKADFLKHFNEFHITNIRHETLNPTKLLPAQSLNSHKEPTRSAANEKKDLFTKKFRCKVCLQLFNTQEDVLKHYSDKHVPTISTHDNDNKFHCSYCSSSFDNDVDLKYHFNSMHKKQEDSNSSDAGLREKERNGTLVSVYRRRKKTAMLEIIPKGDDMAESEESSEGEPENIDESLISDLFKGSTYDRFKKYCCNLCTEHFKDLPALRTHCVKVHRIKRFKCAYCNHSFNDRMRMRTHWNKKHTEMLYKFKKRIFPIPNEDIKCHLCSKTFCHSVSLTRHMSLLHNANRLVLCCTHCSSTFFDPRGLKKHIDRMHKGIPAEKKRQPRKTTVYVPCEICNFKLLGLRELNAHRWVVHYHVRPIRKKYFECLICSQIIKCRISARRHYSLIHENGKKMFRKCQDCVIEYRLYDDFKKHVDVQHQNGFICLTCGMNMQTAHRLVRHNLEHKAVPDELKVLMCDLCGFRAQQKKTIESHMVHHGAAKKIQHYACEFCGFHFTNYQGWHTHRKTHLPKPRVPCTYCGKCFSSDLEKRNHERIHTNECPYVCKVPNCGKKFISVGARSAHRRSHHDQNRSQCVKCLINFTSKQKLLRHELEIHPEFRRFVCRDCFKAFRTPANLERHVESCQHSTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -