Paka001357.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031470.1:5972544-5974954[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.012 0.58 10.4 0.4 1 23 40 65 40 65 0.94 2 14 1 49 4.4 1.5 2 12 159 169 158 181 0.81 3 14 7.2e-05 0.0035 17.4 4.5 1 23 187 212 187 212 0.96 4 14 0.00011 0.0052 16.9 0.9 1 23 221 243 221 243 0.98 5 14 6.5e-05 0.0032 17.6 1.8 1 23 270 292 270 292 0.98 6 14 0.049 2.4 8.5 1.7 1 23 298 320 298 320 0.97 7 14 8 3.9e+02 1.6 6.2 1 20 326 347 326 350 0.91 8 14 7.4e-05 0.0036 17.4 0.6 2 23 357 379 356 379 0.94 9 14 7.6e-05 0.0037 17.4 3.4 2 23 387 407 386 407 0.97 10 14 0.00014 0.0069 16.5 4.0 1 23 413 435 413 435 0.98 11 14 0.0029 0.14 12.4 0.0 2 23 446 467 445 467 0.97 12 14 0.0083 0.41 10.9 0.0 2 23 475 496 474 496 0.97 13 14 0.0036 0.18 12.1 1.6 1 23 531 554 531 554 0.97 14 14 0.00094 0.046 13.9 0.8 1 23 560 583 560 583 0.98
Sequence Information
- Coding Sequence
- ATGAGGATTCATCTGAAAGCATTTATGCTATGTGATCTGTGCGGCTATAAAGAACTTCACAAATCGAAGCTGCTACTGCATTTTGAAGTGCATCTGAGTACCGAGAGCATTCCAAATTTCGACTGTGATTATTCAAATTGCAATGCATCATTTAAGCTGCTTGTGTCATTGAGAGAGCATCAAAATAAAGTGCACAACAAGCCGACAATAACTCAGTTAATCAAAGAAAGTTTGAAAGATCCAGAAGTTCTGCAGCAGCAAAATGCAATTATGGAAGAGTGGAATACGATATGCGAACAGAAACGGGAAAACCAACGGACACTAATCATGAAAACTGCACAATCGAAGGAACCTAAGCCATTCGTGATTTCAAAAGTCTATTCAGGCGGGATAATTGATTCGAATGAGATTCAGCAGGAGCTTGACGAAAAATCAGCTATTCGAGATATAAACAAAATTGCTTTGGGCGCATCTAAATGCAGCGTTTGTAATAAAATCTTCCGCTTTGATTGTCGACGCAATGCACATGAAGAACAAATTCACAACCCAAATAATAAGTTTATCTGCAATGTCTCCATTTGTCAACATGCCTTCAAGCATTCTCATAACCTTAAGAGGCATATCGAGACAATCCATTTGAAGACTCGAGAACTGAAATCGTTTTCATGTACAGTTTGCGGTCAAACATTTGATCAATTTATAAAATTGATAACACACAGAAAAGTTCATCAAGAAAAGCCGAAATATTATTGTGATCATTGTGGAACATTTAAGATGCAGAAGCATAGGATTATCACCGAAAAAAAGTTTATGTGCGAGATTTGTTCTTCATCATTCAAAACCAACAAACGTCTAGAAACTCATATTAAGACTCATCAGCTGAATAGAGATTATCACTGTTCACAGTGCCCATCTACCTTTAAAGTAATTGGAGCTATGAAGAAGCATGAAAAAAACCACAGCCTAGAGAAAACGTTCTGTTGCGATGAACCAGGTTGTAAATGGAAATTCAAGGAAGAAAGGAGTTTAAAACTTCACAAGCACTGCCATGCAAAAACGAACGATTGGATATGTACTTTATGCAATAGAGCGTTGAAGACAAAGGACAATTTACGTCGACACACAATTTCCTATCATACCGGTGGATTTAAACGAATATCTTGTGGAATATGCAAGAAATCATTTCAACAAAAACATCTCAAAAGTCATCTGAGATCTCACACTGACTTACGAATTTACGAATGCAAATCATGTCACCGAAGTTTCAAAACATTCGAAGGATTATCGCGCCACGAAAATACTCATGAGAAGGCGTCCATTAAAAAAGCGCTGGTGAAATGTCCAATATGTCCTAAAATGGTCGCAGGTCCTGGGCAATTAGGAACTCATCTCCTGTCTCACAAGAAGAAAAACAATATGCTTAAATGTGATATTTGCGGGGCTCAGGTACCAAATTACAGTCAAATAGTGAATCACATGGAATCTCATATTAAGGATAAACCTTGGAAGTGCTCAAAATGTATATTAAGATTCAAATGTAAACGGCATTTGAAATATCACTTCGATCGTGTTCATTGCAAGGACACTTATTATCCTTGCGATCATTGTGCATTGGAATTTAATAGAAAAATTTTAAGAACACGTCACATTAAAAAGGAACATCCCGAGACGATCATTTTTCAGTGTGCTAGTTGCAATATCGTCTTTAAAGCAAACAGAAGTTTACAGTACCATCTGATGACGAAACACAATGACGATAATATTGGGAATTATTGA
- Protein Sequence
- MRIHLKAFMLCDLCGYKELHKSKLLLHFEVHLSTESIPNFDCDYSNCNASFKLLVSLREHQNKVHNKPTITQLIKESLKDPEVLQQQNAIMEEWNTICEQKRENQRTLIMKTAQSKEPKPFVISKVYSGGIIDSNEIQQELDEKSAIRDINKIALGASKCSVCNKIFRFDCRRNAHEEQIHNPNNKFICNVSICQHAFKHSHNLKRHIETIHLKTRELKSFSCTVCGQTFDQFIKLITHRKVHQEKPKYYCDHCGTFKMQKHRIITEKKFMCEICSSSFKTNKRLETHIKTHQLNRDYHCSQCPSTFKVIGAMKKHEKNHSLEKTFCCDEPGCKWKFKEERSLKLHKHCHAKTNDWICTLCNRALKTKDNLRRHTISYHTGGFKRISCGICKKSFQQKHLKSHLRSHTDLRIYECKSCHRSFKTFEGLSRHENTHEKASIKKALVKCPICPKMVAGPGQLGTHLLSHKKKNNMLKCDICGAQVPNYSQIVNHMESHIKDKPWKCSKCILRFKCKRHLKYHFDRVHCKDTYYPCDHCALEFNRKILRTRHIKKEHPETIIFQCASCNIVFKANRSLQYHLMTKHNDDNIGNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -