Paka011641.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031469.1:24173808-24176281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.6 3.7e+02 1.6 1.4 2 11 21 30 20 41 0.83 2 17 0.065 3.2 8.1 0.5 3 23 53 73 52 73 0.92 3 17 0.036 1.7 8.9 0.1 1 23 76 98 76 98 0.94 4 17 0.002 0.099 12.9 5.1 1 23 103 125 103 125 0.98 5 17 0.009 0.44 10.8 2.9 1 23 129 151 129 151 0.97 6 17 0.22 11 6.5 1.2 1 19 167 185 167 190 0.83 7 17 5 2.5e+02 2.2 0.6 1 21 198 218 198 220 0.89 8 17 4.7e-06 0.00023 21.2 0.6 1 23 226 250 226 250 0.97 9 17 0.00085 0.041 14.1 1.4 1 21 255 275 255 276 0.95 10 17 0.47 23 5.4 0.9 1 23 480 502 480 503 0.93 11 17 0.013 0.64 10.3 1.6 2 23 509 531 509 531 0.95 12 17 5.9e-05 0.0029 17.7 0.8 2 23 569 591 568 591 0.93 13 17 3.5e-05 0.0017 18.4 0.9 1 23 597 619 597 619 0.98 14 17 0.0028 0.14 12.4 3.9 1 23 651 674 651 674 0.96 15 17 0.00028 0.014 15.6 0.5 1 23 683 705 683 705 0.97 16 17 0.00044 0.021 15.0 0.1 2 23 712 735 711 735 0.95 17 17 0.0072 0.35 11.1 3.5 1 23 743 766 743 767 0.95
Sequence Information
- Coding Sequence
- ATGCCACAAAAGCAGAAAGCAAAGTCTCAAATACGAGATTACTACCAGGATGCTGTCAAGAAATGTAAGAAATGTGGAATGGAATATAAAGGATACCGGCGTGACCACAATAAGAAATTTCATGGAAAAAATTTAGAACCAGCAGATAGTGAAGCATGCAATATGTGCAAGGCAACTGTAAGATCAGCTCAGTTACAACGTCATCAACTACTTAGACATGCTGAATATACTTGCGATCTTTGTGGTGATACTTTTGTTGGAAGAAATAAGTTAAATCTTCATGTTGTGTTGCATCTTGAGAAACAATTTATTTGCAACGCCTGTCAGAAGCAATATCATCGGAAAGATGCCCTTTGCAATCATTTGCGAACCCACTTTGAGAAATATGTTTGTCAGCACTGTGGGCAACAACTTGTAACATTTGAAAAGTTTCAGCGTCATCTTTACAGTCATGATCACAATCCAAACCTGATTCTATCGATACAGCCGAGAGAGTTTTATCCTTGTCGTCATTGTCCCCGTGAATTTACATCAATCTTACATCGAAATAGTCATGAAGATGGTGTGCATAAAAATCGAAGCCAACCGGCGTTTCAATGTCAAGCATGCAAAGATGTGTTTCTTACCAAAGAAGATCTTCGAATTCATTCATTTGATCATTATTGTGGAACAATTTATTATTGTCCAAAGCCTGATTGTGGAAAATACTTCAAAAGCCCTAAAAATCTAAGAATTCATTCAAAGATTCATCTCCCACCAAAGTATCAGTGTGAGCTATGTCAATATCAATTTGCACAATCAACAAATTACATAAAGCATAAGAAACGATGCAAAGGACCAAAAAAGGTTCACACCTTGGAGGAACTCGAAGAAATGCGGAGAATTGCTGAAGAACAATTTAAACAGTTCGGATTGAGCCTCAAGTACCGAAAGCGTACAAACGAGGAGGGACATCTTTTGTCAACAAAGTTAAAAACTCAGCGTAAGAAACAACAGCAAACGAATACAAAGCCCGAGCTGAAGCAAGAGGAAGCTGTTGAGTATCTTATCATTGAAACTATTGAAGAAGAAGAAAATTTACCTGAAACTGCAGAATCTTTTGAAGAAGAACATTTGAACTGTAATGATGAGAATGTCGAAATGGTTGATGTGAAGATGGAAAGCGAAGAAGATAATGAACAGATCCTTGAAGACAATATGCTCGAGCTAGATCCTGTTGTGATGCCTCGTCAAATAGAACCAGAATATCATGAATCATGGAAACGTAAAATTGAACCCAAAGAAGAAAATGACAGAAATAATCAAGAAATTGATAATATATCGCAAACTGTGAAGAAAAAGCGTTTGGCAGACACAAGTAGAGCCAAGTTTTATCAGACTCGATATAAAGACAGCGATTACAATGTTTCAATAAGCAAAAAATGGCGTAAAGCTAAATTCAATTGCGATATCTGTTCTGCTGAGCTAATAGGAGCAAAAGCTTTGCGACATCATCTTTATCAGCATCATGCTGAAAATAAGCGAAAATGTAGTCGCTGTAATGTGAAATTTGAAACATCTTTTGATTTGCTGGCACATAAGAAGCTATTCCATCAACCCAAGATCGTTACAGCTCAGAATGTCTGCGAGTGCGATCACTGCGGTAAGCATATGACCCATTCCAAAATGGCTGTTCATATGATTCATCATAAAGCACCATCCGTTGAATGTCCTGATTGTAAAATGAAATTCAAAACCCGCGGCAACATGAACAAGCATTACAACTTTGCACACATCGGCGAACGATCATTCATTTGTGAAATCTGTTCGAAGGCCTTCAAAGCAAATTACCATTTGATCGGTCATCTCAAGACTCATGGTCCACCGCAGGAATGTCCTGTTTGTCATAAATTCCTTCCTGACATAAACCGTCATATGAAAATTCATACAAATCCAAAAGCATCACCATCATTCCAATGTCCGGTGTGCGGAAAGATGTGCTCAACTAAGCAGCAATGCCAGCTACACGTGCAGCGAGTTCACGAAAAAGTACCGTTGGGTAGAGTCTACAGTTGTCCAACGTGCCAGGAGAATTTTATTCGATTTGCTGACCTTCGTCTTCATCAGTTCATTCATTATCAAGGACGAATTGTTGAATGTCCTTATCCAGAATGCAATGCAATGTTTAAAAAGCCATTTTTGCTTCGATCGCATATGCTTGTCCATCAAAATAAAATCGAATTGACTTTCGAATGCCAATTTTGTCCTGATAAGAAATATGCCAGGAAATCTGCTCTCTATAAACATCAAAAGAATCACCATCCGGAAATATTTGCAACCTCTGAAGATCTGAATGTCAAAATTGAATAA
- Protein Sequence
- MPQKQKAKSQIRDYYQDAVKKCKKCGMEYKGYRRDHNKKFHGKNLEPADSEACNMCKATVRSAQLQRHQLLRHAEYTCDLCGDTFVGRNKLNLHVVLHLEKQFICNACQKQYHRKDALCNHLRTHFEKYVCQHCGQQLVTFEKFQRHLYSHDHNPNLILSIQPREFYPCRHCPREFTSILHRNSHEDGVHKNRSQPAFQCQACKDVFLTKEDLRIHSFDHYCGTIYYCPKPDCGKYFKSPKNLRIHSKIHLPPKYQCELCQYQFAQSTNYIKHKKRCKGPKKVHTLEELEEMRRIAEEQFKQFGLSLKYRKRTNEEGHLLSTKLKTQRKKQQQTNTKPELKQEEAVEYLIIETIEEEENLPETAESFEEEHLNCNDENVEMVDVKMESEEDNEQILEDNMLELDPVVMPRQIEPEYHESWKRKIEPKEENDRNNQEIDNISQTVKKKRLADTSRAKFYQTRYKDSDYNVSISKKWRKAKFNCDICSAELIGAKALRHHLYQHHAENKRKCSRCNVKFETSFDLLAHKKLFHQPKIVTAQNVCECDHCGKHMTHSKMAVHMIHHKAPSVECPDCKMKFKTRGNMNKHYNFAHIGERSFICEICSKAFKANYHLIGHLKTHGPPQECPVCHKFLPDINRHMKIHTNPKASPSFQCPVCGKMCSTKQQCQLHVQRVHEKVPLGRVYSCPTCQENFIRFADLRLHQFIHYQGRIVECPYPECNAMFKKPFLLRSHMLVHQNKIELTFECQFCPDKKYARKSALYKHQKNHHPEIFATSEDLNVKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -