Paka012017.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- JAFFZY010000020.1:11869-13372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00052 0.025 14.7 1.5 2 23 91 113 91 113 0.95 2 11 0.00042 0.021 15.0 3.0 2 23 123 144 122 144 0.97 3 11 0.29 14 6.1 1.7 1 23 151 176 151 176 0.92 4 11 0.00047 0.023 14.9 2.6 3 23 184 204 183 204 0.98 5 11 0.033 1.6 9.1 0.3 2 23 213 234 212 234 0.96 6 11 2e-05 0.00097 19.2 0.6 1 23 240 263 240 263 0.93 7 11 0.0001 0.0051 16.9 0.8 1 21 270 290 270 291 0.95 8 11 0.064 3.1 8.1 1.5 1 23 301 324 301 324 0.95 9 11 0.00011 0.0052 16.9 6.6 1 23 336 358 336 358 0.98 10 11 0.00014 0.0069 16.5 0.5 2 23 366 387 365 387 0.96 11 11 6.8e-06 0.00033 20.7 2.7 1 23 395 418 395 418 0.98
Sequence Information
- Coding Sequence
- ATGCAATTGAGAAGCTCCCGCAAAGTAAATGAAGAACATCCAGAAAATGACACAATTGCAAGTGAAATGCGTGAGGGAATCAATTTTATTATTGCTCCAATTAAGCTTGAAAAATTTGAAGAAATAAAAATCAAATTGCCGCTGATAAATGTCAAGCCATTTAAATGTGATCCAGACGATTGTAAAGAAGAAATTCAGGACTTCAAGATTCGACTTACAGATATGAAAGTCAAAAACAAATTCAAGTTTCATTTTGATCATTTCTATGCCGTTTGCAATAAATGTCCGGAAATTTTCTATTACAAGAAGGATTTACTGCAGCATCATCGACAGGATCATCCAGTGGCCAAAGAGAAAAAATCGACGAAATGTGAAATTTGCAGCAAAGTTTGTAGCAATCGACGAGCCTGGCGACAGCATAAACGCGTTCATGCTGCAGACGTGAGATCTTTCCCGTGTGACATATCATCATGTGAGTCAACATTTAAACTGGAATGTCAACTCAAGAAACACAGACAACTTGTTCACTTCTTTGTCCGTTCATTGCTGTGCGATATTTGTGGCAATACATTTCATCACAAAAGAAATTTGGCTTTACACATCATTAGACATTCTAAGTTAACCGAGAAACCTATCCAATGTTCAAAATGTGAGATGCGGTTCTGGACCGGAAGCGAACTAACTGAGCATCAAGTTAAACATAGTGATGAACGAAAATTTGAATGCGACAAGTGCGGTCGAGTGATAAAGACCAAAAAGCAACTGAAACGCCACTTTGCGATAATTCATAGATCACTGAAATACATTTTCCCTTGCGGAACATGTCTGAAATCCTTCACGCGTCGTTCATCACTTTATTTACATCAAAATCGTGGAAACTGTGAGTCGGGAATATACAAATATCATTGCGCACTATGTCTCCAAAGATTTAAGAATGAAGATAGGTTAGTCTTACATCAGACGATTCGCCATGAAAAACCCAAATATGTGAACGGTACTCGAATGTATTATTGCTCCAAATGTTCAAAATCTTACAAGAATTTCAAGCATCTCAGTCGCCATTTGATGTCTCATGGATTTGGACGCGAGGCGAAAGTGTGTCCAATTTGCAATAAGTCATTTTTCGTAACCGAAGATTACAACAAACATGTGAAGCTTCACAGCTCTGAAAATACAAGAAACTTCAAATGTCATTTCTGTCCGAAATCCTTCAGATTTAACTCGGGCTTGGCTGTTCATGTGAAGAAGTTGCACAATCGAGGATAA
- Protein Sequence
- MQLRSSRKVNEEHPENDTIASEMREGINFIIAPIKLEKFEEIKIKLPLINVKPFKCDPDDCKEEIQDFKIRLTDMKVKNKFKFHFDHFYAVCNKCPEIFYYKKDLLQHHRQDHPVAKEKKSTKCEICSKVCSNRRAWRQHKRVHAADVRSFPCDISSCESTFKLECQLKKHRQLVHFFVRSLLCDICGNTFHHKRNLALHIIRHSKLTEKPIQCSKCEMRFWTGSELTEHQVKHSDERKFECDKCGRVIKTKKQLKRHFAIIHRSLKYIFPCGTCLKSFTRRSSLYLHQNRGNCESGIYKYHCALCLQRFKNEDRLVLHQTIRHEKPKYVNGTRMYYCSKCSKSYKNFKHLSRHLMSHGFGREAKVCPICNKSFFVTEDYNKHVKLHSSENTRNFKCHFCPKSFRFNSGLAVHVKKLHNRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -