Paka010055.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031469.1:14784922-14789899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 1.2 9.4 0.6 1 23 965 988 965 988 0.93 2 13 0.0027 0.13 12.5 1.3 1 23 1101 1123 1101 1123 0.97 3 13 0.0055 0.27 11.5 3.7 2 23 1126 1147 1126 1147 0.97 4 13 0.011 0.52 10.6 1.6 1 23 1153 1175 1153 1175 0.96 5 13 0.00011 0.0054 16.8 1.4 2 23 1182 1204 1181 1204 0.94 6 13 0.042 2 8.7 0.1 5 23 1217 1235 1216 1235 0.96 7 13 0.0002 0.0096 16.1 2.7 3 23 1242 1263 1241 1263 0.96 8 13 0.34 17 5.8 1.1 3 23 1277 1296 1275 1297 0.94 9 13 0.00019 0.0094 16.1 3.3 1 20 1303 1322 1303 1325 0.92 10 13 0.0002 0.0096 16.1 0.2 1 23 1333 1355 1333 1355 0.98 11 13 2.9e-06 0.00014 21.8 2.2 1 23 1361 1383 1361 1383 0.98 12 13 0.00013 0.0062 16.7 5.5 1 23 1389 1411 1389 1411 0.98 13 13 0.0014 0.068 13.4 4.4 1 23 1417 1439 1417 1440 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAACAGCAATGTCCAATATGTATGCTGTATCTGCTCCCTGGAATGTGTCTACAGGACCATCTAGACACTCACCCGAAAGATATGATAATCAAGGCACTGCTGACGGCCAAAACTGAACCAAAACCTGTGACGACAAACGATTCAGCCACCATTTTTCTCACTACAAATCCATTCAATCCAACACAAACCCACATCTATCAGCAACAACAACAACAGCATCAACCAAGTCATCACCAGCCCATTCAAAATAACTTTAGTGTAGCAAAACGCAACACATCAAATGCAAACAATGCTCTTCTTATAGGTAATCGTCCATATCGATTGACTCTCGATGCACCGCAAAATCTAACACAACCAACAGCCACGACCTTCCTCAACACATCAGCTGCTGCTGTCGCTCCGGGTTACGGTACGCGCACCACATCAAATGACGGCGAAACAGCTTTTCGGTGCATCCAAAATACGGAACAGAAGAACATCATGATTGTAAATACCAGTAGTACACAATTTATTCAGCAAACGATGCCCATTAAAAAGCAACCCTCGAGTGACACATCAAATCTGGTTATAATTGATACATCAACTGGTATGCCGCTGACGAGTGCATCGGGTTCAAATGGATCCATTTCAATAATTCCACGATATACGAGCGAAAAATATTCGGGTCCACCACCCTCATATAGCAGCGCTATTTCATCCGTTACCAACACAATAAATGATAAAGCTCGTGTCATTGATCTCACACAAACGCCCGCGACAACAACAATGCCGGTCATGAAGCAAACCAACAACAAAAAATCGACCTTGAATGGCAACGGCGCAGAGGAGAATCATCGTCACTCAATGATAAGGAATCAGCAGCAGCAGCATCATCATCATCATAGACAACCACAAAAGATTCTTGAATGTACACAAAATGAGAATGGTGACTTTATGATCACAGAAAAATTAGTGTCGTCTCATCAACAACCCTCAACATCCACACAACATTTGACAATTTCGCATGAGGAAGAAATTATTGAGGAAATTCCTTCTAGCAATGGCGATTACAACATCAAATTTCTTGAGATTTCTGATAATCAGATGACTTACAATATTGATGATGATGATGATGATGAGCATATGGAGGAACGGCAACATCATCAGCAGCAGAAAGTTGCCACAGCTGATGATTCAAGTGAAACTCGAGAGAATGTAGAAGAAATACAGGATTTTTCATATCTCTCTAAGGCTGGATCCTCAAAGCTGCCCAAAAAATTAACTGCTGGTCTAAAAGTGCTCAGTAATGTAAAAGTGACATCTTCTGAAATGCTACCATCTAGTATCAAAGACATAATTTCACAATACAATCATGCTGAAAGTGAACGTCAAGAAGCAGAACGGAAAGAAGAGTTGCATGAGAAAATGGACTGTAAATCAGATAATAGTGATGATGTTAAGAACGAATTCGATTCAATGATTCATTGCACTGAAACGATGAATCTGAGCAAAGAAAAAGATGAATCAACCAGTGCTTGCACAAGTGTTATTCGTAAAAACGACACAAGCTCTTCGTCAATTCACGATCATGCAACTGAGTCGAAACCATTATCACCATTGATGTGTGCACAGGACGATCCGAAGCCGAGTACATCGGGATTATGTCAAAAGCCCATCAGTGTTGTGTTCAATACAAATTCAACCAATAGACTGAAAATTAATAAACAACCCAAAAAATTGGTGATAAAGCTAAAGAAACCACTAATTCCAGAGTCCGAGTGTACGCCGGCATCGTCAATAGAACAATATTCGAATGAAAATGAAATGGTTTTTGTGAAAAGTGAAACAATCCACGAAGAAACAATAAAGACTGTCGATATGACGTCTAAAATTGAGTGTGATGAGAAACAACACGAAGAACCACCGACAACATCTCAATACAAAACAGAAACAGAGGAACAACATTTCACAGTGACGTTCCTAAATCAGCATAATTTTGAACCGGTCAAACAGATCACTGTGACACCGGAAATTCATCATGACAGTGAAACAAATCAATCACTTATGAGTATGGACCTTGAACCAGAGACTGGCAACATAAAACGTGAACAAATTGATGATGACTTGGGTGTTGTTATCAAAACGGAATTGAATACAAGTAGCACATCTTCAGTCACGTCGAGTCGTAGCTCATATTCAAACTCAAGTCCGGGTCCATCACGTCTAACAGCGGAAAGCACAACAAATGAAAATTCTCAACTCAATTTTCTTTATCAAAATGATCGCGTTCGCTTCTCGCCACCATTATCACCATACGTTTATCTCAAAACCTTTTCATCAGGTGGTCAAAGTGATGAGCAACCAAAGCAAGAATTGTCCTGGATTGGTGGTAGCAGCAGTTTAAATATGCAAAATGATCACAACTCAACAAGTTCCAGATATACACCATCCTTTGATGATAATCGAAGCAACTACACAGATCTTGACAGTGGCACAAAGGCCAATTCATTGGGTGATCGTCATATTAGAGCACCATCTACTGATAGCGTCAATATTCGTACAGATGAAAAAATGCCAGCGCGAGGTGAAATCAGTGAACAGGAAAGTAATGGCGAAATGGAACAACCTTGGCATCCGTATTTTCAGCTTCAAGCATTTCCCAGCTCCTACGACATGAGCACAGCTCAAGAGTGCTGGAATCTATCGAAGGCCGATAGTCAAAATGCCTGCGATTCCAACAACATTCAAAATGTGATAATAAATTTCCCACCATTAAATGGTCACGACGATGACATCAAGCCACCAGATCTGCTTAAAAGTATAATTGTTACGAAACAAGAACCGCCATCATTGAACGAAGAAGCAAGTGGAAGTTGTAGCAATTTGATTGTGAAACGCAATCGTTCGTTTCGTTGTCCAGAGTGCTCGAAAGTTTTTCTTAAATTGCGTGCTCGTAATAGACATATGGAGCAGGATCATCCACATTTGCGGCGCATCAGGAAGATGAAATCAGTACCAACATCAACACAGACAAGTAAATCAGACCCGTCTGTATTTGTTGCATCATCATCATCGTCTCTGGTTAACTGGACAGCTGCCATTGCGGAAACAACTACAAACTCACAGGAGCAGGAAGTTAAAGTGCTGAGTATTATAAAGAATGAACCATCAACGTCGGCTGCTGTGTTGGTTAAAAACGAAATGAATCGGATTCTTATCAATGGTTCAATCAAGATGGAAATGGATCGTATGCTGTTGGAACCGTCAACGTCATCAACATCGCCATTGTCAATTGGACTTAAAATCAAACGAACTTATATGTGCGCCAAATGTAATGAACAATTCAAGACACTCAAACTGCTAGACCGTCACTTTCAGATTCATCCGGCTGAATGTACGCTGTGCCAGAAAACCTTCAACAGCTGGAATACTTTTTCACTACACCTCAAACATCATTTGAATATTCGCGTTCATGCCTGTCGCTTTTGTCCAAAGAGATTTGTTCAGCGGCAACGATTGGTGGAGCATGAGCGGGTGCACACTGGCTCAATGCCAATAAAGTGTCCAGAGTGTGATGAACGCTTCAGGCGCTATTCAAATATGCTTCATCATAAAGCTCGAGTCCATCTCAATAAGAAAGCCAAACAAGAAGACTTTGTTTGTAATTGTGGTGAGATATATCCAACTCGAGCAAAATTGGAATGGCATCAGGAGACACACGAAAACAAGCCGAAAGCATGTCCATTTTGCCGAGAACGTTTCACTCATCGAAATAGTCTCACACGGCACATCCGACTTTCCCATACTGAAAAATACGTTTTTGTCAAAAGCAAATCCGTCAACTGTCCTGTCTGTAATTGCAATTATTTGCCGTCGAGCATCAAAGCTCATATGGCTACGCATCATTTATCGAATAAGGAATACAGCTGCTCAATTTGTAGCAAACAATTCAGCACCAAATGGAACCTCAAACAGCATCATTGGACGCATGCAAATCGTAGCACAAAACCATTCCAATGCAATATTTGTCCGAGTGCATTTGTACGTGAAACTGATTACACAACACACATGAATGCTCATCGCTCGATTAAACCGTACACTTGCAACTATTGTGGTCGACAATTTGTTCGTAAATATAATTGGTTACGTCATACGCGAGAACATGAGCGCGAGAAGAAATTTTCATGTGAAACATGCCATAAAAAATTCCATCGTGCTTATTATTTGACCGAACATATACGTGTGCATACAGGTGAACGTCCATTCTCGTGTCAAATATGTGGAAAGACATCAGCAACAAAAACAAATCACAATAAACATATTCGAATCCATCATGCACGTGATCCGCTCACAGCTGAAGGCTAA
- Protein Sequence
- MEQQQCPICMLYLLPGMCLQDHLDTHPKDMIIKALLTAKTEPKPVTTNDSATIFLTTNPFNPTQTHIYQQQQQQHQPSHHQPIQNNFSVAKRNTSNANNALLIGNRPYRLTLDAPQNLTQPTATTFLNTSAAAVAPGYGTRTTSNDGETAFRCIQNTEQKNIMIVNTSSTQFIQQTMPIKKQPSSDTSNLVIIDTSTGMPLTSASGSNGSISIIPRYTSEKYSGPPPSYSSAISSVTNTINDKARVIDLTQTPATTTMPVMKQTNNKKSTLNGNGAEENHRHSMIRNQQQQHHHHHRQPQKILECTQNENGDFMITEKLVSSHQQPSTSTQHLTISHEEEIIEEIPSSNGDYNIKFLEISDNQMTYNIDDDDDDEHMEERQHHQQQKVATADDSSETRENVEEIQDFSYLSKAGSSKLPKKLTAGLKVLSNVKVTSSEMLPSSIKDIISQYNHAESERQEAERKEELHEKMDCKSDNSDDVKNEFDSMIHCTETMNLSKEKDESTSACTSVIRKNDTSSSSIHDHATESKPLSPLMCAQDDPKPSTSGLCQKPISVVFNTNSTNRLKINKQPKKLVIKLKKPLIPESECTPASSIEQYSNENEMVFVKSETIHEETIKTVDMTSKIECDEKQHEEPPTTSQYKTETEEQHFTVTFLNQHNFEPVKQITVTPEIHHDSETNQSLMSMDLEPETGNIKREQIDDDLGVVIKTELNTSSTSSVTSSRSSYSNSSPGPSRLTAESTTNENSQLNFLYQNDRVRFSPPLSPYVYLKTFSSGGQSDEQPKQELSWIGGSSSLNMQNDHNSTSSRYTPSFDDNRSNYTDLDSGTKANSLGDRHIRAPSTDSVNIRTDEKMPARGEISEQESNGEMEQPWHPYFQLQAFPSSYDMSTAQECWNLSKADSQNACDSNNIQNVIINFPPLNGHDDDIKPPDLLKSIIVTKQEPPSLNEEASGSCSNLIVKRNRSFRCPECSKVFLKLRARNRHMEQDHPHLRRIRKMKSVPTSTQTSKSDPSVFVASSSSSLVNWTAAIAETTTNSQEQEVKVLSIIKNEPSTSAAVLVKNEMNRILINGSIKMEMDRMLLEPSTSSTSPLSIGLKIKRTYMCAKCNEQFKTLKLLDRHFQIHPAECTLCQKTFNSWNTFSLHLKHHLNIRVHACRFCPKRFVQRQRLVEHERVHTGSMPIKCPECDERFRRYSNMLHHKARVHLNKKAKQEDFVCNCGEIYPTRAKLEWHQETHENKPKACPFCRERFTHRNSLTRHIRLSHTEKYVFVKSKSVNCPVCNCNYLPSSIKAHMATHHLSNKEYSCSICSKQFSTKWNLKQHHWTHANRSTKPFQCNICPSAFVRETDYTTHMNAHRSIKPYTCNYCGRQFVRKYNWLRHTREHEREKKFSCETCHKKFHRAYYLTEHIRVHTGERPFSCQICGKTSATKTNHNKHIRIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -