Paka009379.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031469.1:11178795-11181061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.081 4 7.8 1.9 2 23 52 76 51 76 0.95 2 18 3e-05 0.0015 18.6 0.9 1 23 111 133 111 133 0.98 3 18 3.4 1.6e+02 2.7 0.8 2 23 140 161 139 161 0.91 4 18 0.0021 0.1 12.8 2.1 1 23 165 188 165 188 0.96 5 18 0.8 39 4.7 1.0 2 23 196 218 195 218 0.85 6 18 0.0017 0.084 13.1 0.4 1 23 226 248 226 248 0.95 7 18 5.6e-05 0.0028 17.8 0.4 2 23 255 276 255 276 0.98 8 18 0.0039 0.19 12.0 0.5 1 21 281 301 281 302 0.95 9 18 0.012 0.57 10.5 2.8 1 23 420 442 420 442 0.97 10 18 0.052 2.6 8.4 3.6 1 23 448 471 448 471 0.92 11 18 2.1e-05 0.001 19.1 0.2 1 23 482 506 482 506 0.99 12 18 2.3e-06 0.00011 22.1 1.2 1 23 512 534 512 534 0.98 13 18 0.00051 0.025 14.7 2.4 2 23 541 563 540 563 0.95 14 18 0.93 45 4.5 0.3 3 23 572 592 570 592 0.85 15 18 0.00043 0.021 15.0 3.3 1 23 600 623 600 623 0.96 16 18 0.11 5.2 7.4 0.8 1 23 632 655 632 655 0.93 17 18 0.053 2.6 8.4 1.9 3 23 663 683 662 683 0.98 18 18 0.0048 0.24 11.7 0.2 1 23 688 711 688 711 0.96
Sequence Information
- Coding Sequence
- ATGGATTCTGCAGTCGAAACAAAAGATGAGCTTGTTGAGATCAAACAAGAGCTTGAAGGGAAATCAGTTATTCAACTAAAATCAGTGCTTGGAGTAGAACAAACTAAGAAAAATAATAAATCTCGGATCAAAAAGAAAAAAACAAAAAAGATACGATGCACGAAATGTAAGAAATACAAAACATTTGATACTAAGAAACAGCTTGATGAGCACGTTTTAAAGGATCACACTAGAACTAGGGACGCAATAATTTGTGAATTTTGCTGTGCAGTCTTAAAGTCTGATAATTACTACAAAAGGCATCTAGCTACCCGACATCGTCAAAGAGAGTATACATGCGATCACTGTGCAAAAGTCTTTAGTGCAAAGGAATATTTGATAAATCATATCGAACGACACAAACAAACGACTCAACTTCAGTGTGCGATTTGCTTAACGAACTATCTCACCATCCAAACATATCGTCGTCACCTGAAATCACATCTCGAAAAGTTCCAATGCCAGGAATGTGGCTGCATATTCAACCAAATACATTTATTGGATAATCATATTGCATCTAAACATTCAGATGCATTGCCATCGCTTCAATGTGAATTCTGTACCAGAATGTTTCCATCAACAATCGCGAGAAATAATCATCACTATCTTGCTCATCGCAATAGAAAGTCACCCGATTTTAAATGTTTAGAATGCAATATTACTTTTGAAATGAAGGAAGAATTAAGAATTCATTCGTTCATTCACTTCAGTGGCGAAATTCGAACATGCCCTGAGTGCGCACAAATTTTTAAAAGTAATCGACTTCTTCAGATCCACATGATGAAACATCAGGAGAAGCAATTCATGTGCGATGTGTGTGGCGACTTTTTTACCTTTAAATCTGGTTTAAGTAAACACAAACGTTGGAATCGATGCAAAGGGCCAAACAATTCTAAGAAATCAGTCGAACTCAGAAAGAAAGATATGACTTTTGAGAATGAAGTTGAGATTGCTACTCTTCAATTAATGGCTACCAAGAAACGTAAAACCATTGAAAAAGCATTCCAAGATGTTATGGCTGATTTCAGAGAGGAGGCAAAATCGGAATCAGAGTCAGATCATGAGCAATTCGATTTATTTTCTAATGCTATTGATGTGTGTGGCAAAAATGAGAAGGAGGAGCAGCCTGTAATTAAAATTGCATATCAAGAAGCAGCGAAAGAGAAACAAATATCCGAGTCCAAGAAGCGGAAACATCGTGGTCGACAACATCTTACATACATTTGTGATTACTGTAATGAGTCGATAAAGTTCAAGCACAAAATGATAAAGCATCTAAAGGAGCACGTCCTTCATAAAAGACACAAATGTCGCCATTGTAACGAAGCTTTCAAAAGTCGTCGCCTTATTCTTCAGCATTCGTTGAGCGTACACGGCTTTAAGCCAAAAACTTTGAACGAAACTTACAAATGCAATGAATTAGAATGTGGAGCTGTATTTGACGTTAAAAGCGCATTTCAAGTTCATCAACGCAAACACAAGGATGAACGCAATTATTCATGCTTTGTTTGTAATTTAGCATTTAAAAGTAACTCAAATTTGCGCCGCCACTATCTGGTGCATGAGCCAGAACGTATCTGGACATGTGAAATTTGTACGAAATCCTTTAAAACAAAAGCATCGTGCAAATCGCATATGGAATCAGTCCATGCTGAAGTATCAGTTTACGTAAGTTGTCCATTATGCTCATCAATCGTTAAGGAAAAGAATCTTCGAGTTCACATGAAAAATATGCATGCGAATGAAGGACTGAAACCGTTTTATTGTACAGAATGTGACAATTATTTTCGTACTAAATCATCATGGAAACGCCATCGAGAATCATTTCATGAGCCAGTAAATCGAGGCGTTTCTTATGAATGCCCTTCTTGCCCTGGTCTCGTCTTCAATCGTCATCGAGATCTCAAGCAACATTCTTTTATTCATTTCAACGGCAAAATCCATGGGTGCTCTACATGTCATAAGCTTTTCAAATCCCGTCGATTAGTTCTAATTCATCAAGCAATGCACAATCCTGTACAATATCCATGCCCAGATTGCAATGTTATCTTCCAGACCCCCGGTGGAAGGCGAAAGCATTTTAATAAGAATCATAAATCATTACTTGAACCAAAACATGAAAATGAGCATGAACAAACATTCGTTGAAAAAACTGCTAAGAGTATCTTTAAATAA
- Protein Sequence
- MDSAVETKDELVEIKQELEGKSVIQLKSVLGVEQTKKNNKSRIKKKKTKKIRCTKCKKYKTFDTKKQLDEHVLKDHTRTRDAIICEFCCAVLKSDNYYKRHLATRHRQREYTCDHCAKVFSAKEYLINHIERHKQTTQLQCAICLTNYLTIQTYRRHLKSHLEKFQCQECGCIFNQIHLLDNHIASKHSDALPSLQCEFCTRMFPSTIARNNHHYLAHRNRKSPDFKCLECNITFEMKEELRIHSFIHFSGEIRTCPECAQIFKSNRLLQIHMMKHQEKQFMCDVCGDFFTFKSGLSKHKRWNRCKGPNNSKKSVELRKKDMTFENEVEIATLQLMATKKRKTIEKAFQDVMADFREEAKSESESDHEQFDLFSNAIDVCGKNEKEEQPVIKIAYQEAAKEKQISESKKRKHRGRQHLTYICDYCNESIKFKHKMIKHLKEHVLHKRHKCRHCNEAFKSRRLILQHSLSVHGFKPKTLNETYKCNELECGAVFDVKSAFQVHQRKHKDERNYSCFVCNLAFKSNSNLRRHYLVHEPERIWTCEICTKSFKTKASCKSHMESVHAEVSVYVSCPLCSSIVKEKNLRVHMKNMHANEGLKPFYCTECDNYFRTKSSWKRHRESFHEPVNRGVSYECPSCPGLVFNRHRDLKQHSFIHFNGKIHGCSTCHKLFKSRRLVLIHQAMHNPVQYPCPDCNVIFQTPGGRRKHFNKNHKSLLEPKHENEHEQTFVEKTAKSIFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -