Paka002137.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031470.1:10493786-10496499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.9e-05 0.0019 18.2 0.3 3 23 9 29 8 29 0.97 2 18 0.00026 0.013 15.7 0.5 3 23 37 57 36 57 0.96 3 18 1e-06 4.9e-05 23.3 3.7 1 23 63 86 63 86 0.98 4 18 0.0001 0.0051 16.9 0.7 1 23 156 180 156 180 0.94 5 18 9.6e-06 0.00047 20.2 0.6 1 23 186 208 186 208 0.97 6 18 0.00025 0.012 15.7 0.6 1 23 220 243 220 243 0.97 7 18 0.0078 0.38 11.0 0.7 1 23 248 273 248 273 0.97 8 18 0.0026 0.13 12.5 2.0 2 23 438 461 437 461 0.94 9 18 0.048 2.4 8.5 0.1 3 23 504 525 502 525 0.95 10 18 0.036 1.8 8.9 3.6 1 23 548 571 548 571 0.94 11 18 1.2 61 4.1 0.3 2 23 580 601 580 601 0.95 12 18 0.017 0.82 10.0 1.2 1 23 605 629 605 629 0.94 13 18 0.039 1.9 8.8 7.2 1 23 638 661 638 661 0.96 14 18 0.0001 0.005 16.9 1.1 1 23 668 691 668 691 0.96 15 18 0.00067 0.032 14.4 0.7 1 23 696 719 696 719 0.93 16 18 0.062 3 8.2 2.9 1 23 725 748 725 748 0.97 17 18 0.006 0.29 11.4 0.5 2 23 753 775 752 775 0.94 18 18 0.00036 0.018 15.2 4.0 2 23 782 804 781 804 0.92
Sequence Information
- Coding Sequence
- ATGGATAAACTTTTGATGGAAATTTGCCCAATTTGTGGCCGATTATTCTCAAAGAACAGTCTTCAGCGGCACATGAATACTGCTCACACACGGAAAGCATTAAAAATTTGTTCAATTTGCGCTAAGGAATTTACAAATGCCTCAAACTTTGCTTATCACATGGCTCATCATGCTAATGAACGAAGCTTCACATGTACGCACTGTCCTCGAACATTCAATACCAGCGCTGATTTGAGACAACATCAAAGAAAGAGCCACGGATTAGATGTTGGTCCATGCAAGAGGCCAAAGAAAACGCCAAACTGTGAGCAATGCTGCAATGGATTCCTGACAGAACAGAATTATGAGCTACACATGACGAGTGCTCATCAGAAAGCAGAAACGGAAATGGAAAAGTGCAATATTTGTGGAAAACTGATTCGTTCATTGGCTCAGCATCTAAAAAACGTACATGAAGCTCATCGATTCTTTTGTGAATATCCGGAATGTGGTAAAACTTTTTCCAAACGCACCGGACTAGACAGACATACAGCTACTCACACTAAGGCAGTAAACTTCCGATGTCCTGAATGCAGTAAAGGATTCATTGAGAAGAGTCAACTCGAACGTCATTTCGTTACGCATTTGAAACCAAAGGTAAAAGAGGAAGTTACACAATTTCAATGTTCCGTATGTCTGAAATATCTCAAACGTAACAGTGATTTAGTTAGACACATCAGCTCCGTTCATGGTACTAAAGATTATGAGTGTGATATGTGCGGCCCAAAGAGACGTTTCTCTGACAAATTCGCAGTCTTGAAGCACATCAAGTACTATCACATGAACATCAAAAGACAGAAAACTGAACGCAAAATAGTAAGACTTGCGGATATAATTGCAAAAGTTTTCGCCGATAGCGCAAAATTCTCAGACAGTCAAATGGAAATGCATGAAGATTATCTGGATGAATCGTTCCACGATGATGACATGACGCCAAAATTAAATATTCAGAAGATGACACAGATGGTTTCATTTGAAAATGTTCTTATCAAGCAGAAGAAATTTGATAATATGCGTAAAGAAATCGAAAATAACGACGAAATTAAATCCAAGTATGAAGATAATGAAAACTTGATAGATTATGATTTAATTAAGGAGGAATATTATCTAGAAGAAGCACTTATTGATGGACCGAATGATAATGAATCTAATGTTGATGAATCTGTAGAATGCATCGAAGAGCTTTTACTACTGCAAGAAGATGAAGAGGAAATTCAGCCTGTGATTATGACGAAGATAGCAGCGAAAGAAGTAGATAAGCCCATTGTATGGGAATGCAAGCGAGATTGCAAGAAGACATTTGAGAGTTTTGAACAATTAAAATTGCACAATAAAAGAAATCACGATTGGAAATGCAAAAAATGTCCGCGAGATAGTAAAAAATTCGTAAATTTGTTCTTTCGGCGAGAAGATTTTGAAAGACATTGGATTGAAAATCACAGTGATGAGCCATTTCCGGATAAAATTGCATGCACATTATGTGGGGATTTGTTTGCTGATAAGCCTTCACTCCAATATCATCAGCAATCCGATCACGGCATGAAGAAGACATCGAAGCCTTCAAAAGCTAAACCAAGAAAGAAATATGTATATGTCAACAGATATTCATGTACTTATTGCAATGAGAGTATTAAAAGTTGTTTAAAGCTTAAGAAACATATATTTCAAGTTCACAATAATGGTGCTGTGCCGTTGCGTAAATGTTTCCTGTGTCAAGAAGAATATGAGAAGTTTGAAGATTTTGAATCTCATGTCATCGAGCATGGTGGGGAATATGTCTGTTTTGTTTGTAATGGACGTCCATTTCACGATTCCAGTTCGTTGAAAACTCATCAGCTTGAAACTCACTATCGCTGTGACGAGATTAAACCATATCATTGTGATATTTGTGATCGAAGATTCCAATGTCATTCTCAGATGCAAAAACATATGAGAGAAGTTCACATTCAAGATACTGATCCACATGTATGCGCCTTTTGTGGAAAAATGTTTAGAGTTGAACAAAATTTAATTGTCCATCGACGCAACACTCATGGCGAAAAAAAATTCATTTGTCAGACTTGTGGTCATGGATTCGTGACTAAAAGCCGATATGAGGCTCATATGGCTGGGAAACACACAAAGGAAATGAATTATTATTGCGAAATATGCAATTCATATTTCACCAATGTCCTAAATTACAATCATCATAAGAATTCGATTCATGGCGAATACAACAAATGCAAGGACTGCGATTTGACTTTTGCAACATATCCTCTGAAAAAGAAACACCTCCTCGAGGTTCATCCGGAACTCAGACAATTAAGATGCCACATTTGTTTTCGATCGTTCAGATTTGAGCATAATTTACGTGTTCATATGGATGCAAAACATCCTGAAAGCGCCACAACTGAAGGATTTCCCGAGCATTTTGTGCCACCACAATTTCATGATCGATTCCAGCAAGAATTTAATTTGCATAATTTTTCTTAA
- Protein Sequence
- MDKLLMEICPICGRLFSKNSLQRHMNTAHTRKALKICSICAKEFTNASNFAYHMAHHANERSFTCTHCPRTFNTSADLRQHQRKSHGLDVGPCKRPKKTPNCEQCCNGFLTEQNYELHMTSAHQKAETEMEKCNICGKLIRSLAQHLKNVHEAHRFFCEYPECGKTFSKRTGLDRHTATHTKAVNFRCPECSKGFIEKSQLERHFVTHLKPKVKEEVTQFQCSVCLKYLKRNSDLVRHISSVHGTKDYECDMCGPKRRFSDKFAVLKHIKYYHMNIKRQKTERKIVRLADIIAKVFADSAKFSDSQMEMHEDYLDESFHDDDMTPKLNIQKMTQMVSFENVLIKQKKFDNMRKEIENNDEIKSKYEDNENLIDYDLIKEEYYLEEALIDGPNDNESNVDESVECIEELLLLQEDEEEIQPVIMTKIAAKEVDKPIVWECKRDCKKTFESFEQLKLHNKRNHDWKCKKCPRDSKKFVNLFFRREDFERHWIENHSDEPFPDKIACTLCGDLFADKPSLQYHQQSDHGMKKTSKPSKAKPRKKYVYVNRYSCTYCNESIKSCLKLKKHIFQVHNNGAVPLRKCFLCQEEYEKFEDFESHVIEHGGEYVCFVCNGRPFHDSSSLKTHQLETHYRCDEIKPYHCDICDRRFQCHSQMQKHMREVHIQDTDPHVCAFCGKMFRVEQNLIVHRRNTHGEKKFICQTCGHGFVTKSRYEAHMAGKHTKEMNYYCEICNSYFTNVLNYNHHKNSIHGEYNKCKDCDLTFATYPLKKKHLLEVHPELRQLRCHICFRSFRFEHNLRVHMDAKHPESATTEGFPEHFVPPQFHDRFQQEFNLHNFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -