Paka007261.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031468.1:24548141-24549886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-05 0.0012 18.9 0.3 3 23 16 37 15 37 0.96 2 15 1.1e-05 0.00053 20.0 2.2 1 23 43 66 43 66 0.94 3 15 3e-06 0.00015 21.8 4.6 1 23 72 94 72 94 0.98 4 15 5.9 2.9e+02 2.0 1.2 2 23 102 126 101 126 0.78 5 15 0.00064 0.031 14.4 1.9 1 23 141 163 141 163 0.97 6 15 3.3e-05 0.0016 18.5 0.3 2 23 170 192 169 192 0.95 7 15 0.00065 0.032 14.4 1.4 1 23 198 220 198 220 0.96 8 15 1.6e-05 0.00078 19.5 2.7 2 23 356 378 355 378 0.96 9 15 0.0015 0.073 13.3 2.3 1 23 384 406 384 406 0.97 10 15 9.5e-06 0.00046 20.2 0.8 1 23 412 435 412 435 0.98 11 15 6.4e-05 0.0031 17.6 6.5 1 23 444 466 444 466 0.98 12 15 0.15 7.2 7.0 3.3 1 23 472 497 472 497 0.94 13 15 0.074 3.6 8.0 4.6 1 23 503 527 503 527 0.94 14 15 0.0024 0.12 12.6 0.8 3 22 538 557 536 557 0.95 15 15 0.072 3.5 8.0 2.5 1 18 564 581 564 581 0.94
Sequence Information
- Coding Sequence
- ATGGATGAAGCCATTTCAGCTCCAGCTCAGTCAGACTCAGCTATATGCCCCACCTGCGGCAAAAGCTTTGCAAACGTTTACACAATGAATTCTCATCAACGTCAAGTGCACGAAGGCATCAGATCTTATGTTTGTTCGATTTGTTCGCAGTCTTTCACAACCAGTTATAAATTGAGAAGACATCATCTGGGAATACATAGTGCCAGAAGAGATTATCACTGTGAAACGTGTGGACATGCCTTTAAGACTCGTGATATGCTTATTAAACATCAACGAACGCATTTTCAAGGAATGGGTCCTTTCATTTGCTCTATTTGCTGCCCCAATGAAAAATTCAAATTTAAGAGTGGATTGGATTACCATGTAAAAATAAGACATACAGATAAGTTGCCAAGTAAAGTTACAACAAATGTTATTCTTTATCAGTGCAGTATCTGTTCATCTAATTACAAAAGTAGAAAACAGCTTCAACGCCATGAAGATTCACATGCAACTGATGGAAAGATTTCTTGCTCGTTATGTCCTAAAGTTTTTAGAAATGCTAAGGATCTAGCTCAGCATGAGAAGAAGAACCACAAAGAAATAACTATTTACACATGCTCTTACTGCCAGAAACAGTATAAAGGCAAACAAAATTTCGAAATTCATGTCGGTAGCCATGAGAATGAAATGGCGGATTATGAATTTGTTGGTGAAGAAGATGATATAAGCGTCGCTGAAGATCCTTGTGACGAGACTGATTTATTAAAGCATATAGATGAAGAAATGGTGTCAGTTGTTAAAATTGAAACTAGAAGGTTTGTGAATGATCCAGTTCCAGTATTTTCATCGGATGAAACAGAGGATATATTTATAAAGGAGGAAGAATATCAACCGGAGGATCAAGAAAATATCGATGATTTTATAATAGAAGACGATGGCTGCGATGACGATGGAAATATTTTTGCATATGAAGCCAGGTCAGAATTATCAGGACCTGAGGAGACTGTTAACACCCAAGATTTAATCGAAGAACAGTTCCCTGTAACTGAAGAATTTACAAAACCAATCAAAAACCAATCGCTTGTATGTGAACAGTGCGGCATTTCAACAAAGAACAAAAGTCACCTTACCAGACATTACCAACGAAAGCATCTTCAAGAATTTAACTATAGTTGCGATCACTGTTCGAAAAGATTTTTATTGTTATATGATCTCAAAAGACACATGGTGGTTCATTCAAAAAATAGAGACTTCAGTTGTTCTATTTGCGAAATGAAGTTTAAAACCGAAGCATCACTAAAAAGTCACCTTAAAACTGTTCATAGCAATGTCGTACCAGAGAGGAAATTTAGTTGTAAATTGTGCGATCGATCCTATATTCACCAAAGACATCTGAATTATCATATGCGTCAGCACGTTAACGATAAAAAGTATCACTGTGATGTAGATACGTGCGAAAAGTCATTTTTCTATTCTGACGCTGTAAAATGGCACAAAATTCGTTGCCATGATCAGCCAGCTCCATTCAATTGCAATTATAACAGCTGTAATAAGAAGTTCATTCATGAAAAATCTTATGAAACACATCGCAAAGAGCACGATTTAGGTGAAGGTTCGCTAGCAGTCCATTGTCCACTCTGCTCAAAGTTGGTATCAGAGAAACGTAATCTTAAACGCCATTTGCGCACTTGCCGTTCAGTAAAAGAATTTTCGTGTAAATTCTGCAATTTATCTTTTAAAGAACGTTATCAGTTGACAAAGTGA
- Protein Sequence
- MDEAISAPAQSDSAICPTCGKSFANVYTMNSHQRQVHEGIRSYVCSICSQSFTTSYKLRRHHLGIHSARRDYHCETCGHAFKTRDMLIKHQRTHFQGMGPFICSICCPNEKFKFKSGLDYHVKIRHTDKLPSKVTTNVILYQCSICSSNYKSRKQLQRHEDSHATDGKISCSLCPKVFRNAKDLAQHEKKNHKEITIYTCSYCQKQYKGKQNFEIHVGSHENEMADYEFVGEEDDISVAEDPCDETDLLKHIDEEMVSVVKIETRRFVNDPVPVFSSDETEDIFIKEEEYQPEDQENIDDFIIEDDGCDDDGNIFAYEARSELSGPEETVNTQDLIEEQFPVTEEFTKPIKNQSLVCEQCGISTKNKSHLTRHYQRKHLQEFNYSCDHCSKRFLLLYDLKRHMVVHSKNRDFSCSICEMKFKTEASLKSHLKTVHSNVVPERKFSCKLCDRSYIHQRHLNYHMRQHVNDKKYHCDVDTCEKSFFYSDAVKWHKIRCHDQPAPFNCNYNSCNKKFIHEKSYETHRKEHDLGEGSLAVHCPLCSKLVSEKRNLKRHLRTCRSVKEFSCKFCNLSFKERYQLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -