Paka003531.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031468.1:3174903-3178247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.1e-05 0.0015 18.6 0.7 1 23 166 188 166 188 0.95 2 15 0.0029 0.14 12.4 3.3 1 23 194 216 194 216 0.97 3 15 3.6e-05 0.0018 18.4 0.9 1 23 340 362 340 362 0.97 4 15 0.0051 0.25 11.6 0.3 1 23 369 392 369 392 0.94 5 15 6.5e-06 0.00032 20.7 7.0 1 23 451 473 451 473 0.98 6 15 0.048 2.3 8.6 0.0 3 23 495 515 495 515 0.94 7 15 0.032 1.6 9.1 0.5 1 23 521 544 521 544 0.92 8 15 0.031 1.5 9.2 1.9 3 19 553 569 552 570 0.95 9 15 5.1e-05 0.0025 17.9 4.9 1 23 579 601 579 601 0.97 10 15 0.0095 0.46 10.8 1.4 2 23 607 628 606 628 0.96 11 15 4.8e-06 0.00024 21.1 1.3 1 23 634 656 634 656 0.98 12 15 0.00018 0.0086 16.2 0.1 1 23 662 684 662 684 0.97 13 15 0.00051 0.025 14.7 2.2 1 23 690 712 690 713 0.95 14 15 0.16 7.8 6.9 0.3 1 23 727 749 727 749 0.96 15 15 0.076 3.7 7.9 0.1 3 20 1028 1045 1026 1048 0.91
Sequence Information
- Coding Sequence
- ATGGATGATCACGGCTTCATACTATGGCAAGAGGAAGATAATGACCCGAATTATGAAATTATAGAGCGTGAACAGGAAGATCATGTTGAGGGATACGAAGAAGTCAATATGGAAAATGACGAAACAGATGTTGATGGTCATCAGTCCTATTACATGGACGAAGGAATGATACCAGCACCTCAAGAAAACCTCATCTACCTGCATGACGACAATATTGTCAATGGAAGTTCACAGTTTGGTGTTGGTATGAGTCATTTAATTGAACAACGAGTTCAAGAGGCCGAAAATAAAATTATTGGCGACCAAGATGACCAAGAGGAATTCACAGCAACCGTTGAAGAGGTCATTACCGAAGAGGATTGGATACAATCGCAAGGTGAAGAGCTAGTACAGGTTGCGATGGAACAAGTGATTGCTTCCGAAAATTTCACTGAAGATGATGTCGATACAGTGCCCTTACAAACAGATCAAGATGAATACACAACATCAAGACCATATCCATGTGATTTTTGTTCTCGTCGGTTCCGTAAAAAGGCAAATTTGATGAATCATATGGTAGCACATCAGAACGTTCGTCCTCATATGTGCAATTTATGTGGCTCGCGCTACGTTCGCAAATGTGATCTTATCAATCATCTTAAGATTCATGCTTACAACATTGAAGACGAAGTATTGGGACTTGGTTCAAGCACCACTGGTGGCAAGAAGAGACCTCATTATGATGAATTAGACTACCTCAATGATTATGATGAAGATCTTCCTGATAGTGACGAATTTGATTATATGTATTCCTCAAAGCCAACAATAGTCGCAACTACTTCATCGACAACTACGAAATCATCGAAATCTATAAAACATGTCAAAAAGAAGCCAGCCAAAAAACAAGCAATTAAAGTTGAGAAGGTGGTAAAAGAAAAGCCTATTGTTCAAGAGTCATTGAGACAAAGCAGTGATGATGATCATCAAATTATTGATCGGTATGTTGAAAGATATCCAATTACTGATCCACGAAAGCCATTTGTTTGTCAACACTGCGGTGTTGCATTCACGCGCGAGAAGGCTCTCGAGTCACACACTAAATTGCACGCAAATCAGGAGCCAACATTCGATTGCGAAATTTGTAATGATACATTTTTTGACAATAATTCATTGGAAGAGCACATGGAATTGCGTCACGATTATTCTACACGAGCGCGACGAACAGGCGGAAAATCGACTGGTGGAAAAACTTCAGCAGGAACTTCTTCAGGAACACAGGCAATGGAAACACTCGATTACGACGACAGTAATTCAGAATATGAGCCAGAGAAAAATATTGACTTCGACGATGATGATGACGAAGATAATGGACATACCTGCGACAAGTGCCATACATCGTTTAAAAATTCAGAGAGTTTAAAACGCCACATTAAGACACATTTCATTAAATCAGAAATTCTTTCGGATGATGAGGATTTGCCAGCGATTAATTCTGCTCTGGGATGCAATGTATGTGGAGAAAGTTTTATAGAAGCTTTAGATCTCTTGGCTCATGCTGAGGAGCATGCTCGTTTTCAGCCATTCAAATGTCAACTATGCGGTGAGACATTCTTTGAAGAGAACAAGATCAAGATCCATTTGATGGATAATCATCAAAACGAGCTCACTGAGGCGAGTTGTAGACTTTGTGGTAAACAATGCCGCGATCAGCGGTCGCTTATCAAACATTCGTGGGAACATTCGCGTGAAAAGAATCATCCTTGTTCGAAATGTGGTAAAAGTTTTCACAATAAGGCACGTTTGAAGCGCCACATTTCCTCCCATCGCAACAAAAGCGTTATGTGTGAAATTTGTCATGAGGAATTTCCCGATGGCCGCCAGCTGATGAACCATCGGCATTCACATACAAAAGCTAATCAGTTTCCATGCCATGAATGCGGCAAGACTTTTGGATCACGAAGTTCTCAACAAATCCATCTCCGCATACACACTGGTGAACGTCCTTATGCTTGCCGTTATTGTTGGAAAGCTTTTGCTGATGGCGGTACACTGAGAAAACATGAGCGCATACATACAGGTGAGAAGCCATATTGCTGCCTTGTGTGTCCTCGTGCCTTCAACCAGCGAGTTGTCCTTCGTGAACATATTCGTTCACATCACTCAGCACCCGACTCTCAACATGGAACAACTTTAACACCGTATTATTGCTCACTTTGTGGGGATTTGTTCTCAGTTTCATTGGACCTCATTCATCATTTGATTGAGCACAGCGATAGAAGTACTGCAGCTAAACGAGTCCAACCCACCGGGCCACGAAAATACAAAAGAAGACGCAAATTAAATGGCGAAAGCAACGATAATGACTTTATTACGCTCGAAGGAAACTTTACGCGGTTTCAAAAGTCAATTAAAGAAGAGCCGTTGGATTATGATAACACAATCATTGCCACAAAGAAATTATTGTCATCAAATGCATCATCAATTCTTCCACTCCCAAGTGATTTTATTTTTGCTGATAGCGAATTCAAATTACCCGATGAAATATTCCAAACAGCAACGAAGAAATATCCGAAAGTATCCTCACCATCGCGACCAAAAATGATTTACACTCAGAAAACAAGGGTGCAGGCTACACATGGTAAACGAAAGACAAAAACAATGATACAGAAACGAGTTCTAAGCAGGACAACTCGCCTAAGTCGCCAACGGCAACAACAGTTACAACAACAAAAACCTGTGAAGCAATCGATAGATGAATATGAATCGATGGAAAGTGAGAGTTGGTCTAATGATGATCCAAATGAAGATGTCTTGGACACGCTGCTGAAGCGAGAACGCAAATTGTCTGAGAAATTTACTAGCGATTTAGTAAATGATTTGCAAGAAATACTGCGATCACCCATCAAGATGCCAGAGGAAAAAAAGCCACCAAATGGCGATACCGGAATGAATCGTCGACCGGTATTTACAAGTTATGGCGCAATAGCACCAGAAAGCCTGTCGACTATTTTTGGATCGCCTAACAAAGACAATCAATTGCTGGACGATGATGAGATTGAGAATATCGTTATCAAGAAGGAGATCTTTGACGATGGACACTTATGCGGAATTTGCGGTGATTCCTTCGAGACGAGAGCTCAGCTATTAAGTCATGTACCCATTCATATTTAG
- Protein Sequence
- MDDHGFILWQEEDNDPNYEIIEREQEDHVEGYEEVNMENDETDVDGHQSYYMDEGMIPAPQENLIYLHDDNIVNGSSQFGVGMSHLIEQRVQEAENKIIGDQDDQEEFTATVEEVITEEDWIQSQGEELVQVAMEQVIASENFTEDDVDTVPLQTDQDEYTTSRPYPCDFCSRRFRKKANLMNHMVAHQNVRPHMCNLCGSRYVRKCDLINHLKIHAYNIEDEVLGLGSSTTGGKKRPHYDELDYLNDYDEDLPDSDEFDYMYSSKPTIVATTSSTTTKSSKSIKHVKKKPAKKQAIKVEKVVKEKPIVQESLRQSSDDDHQIIDRYVERYPITDPRKPFVCQHCGVAFTREKALESHTKLHANQEPTFDCEICNDTFFDNNSLEEHMELRHDYSTRARRTGGKSTGGKTSAGTSSGTQAMETLDYDDSNSEYEPEKNIDFDDDDDEDNGHTCDKCHTSFKNSESLKRHIKTHFIKSEILSDDEDLPAINSALGCNVCGESFIEALDLLAHAEEHARFQPFKCQLCGETFFEENKIKIHLMDNHQNELTEASCRLCGKQCRDQRSLIKHSWEHSREKNHPCSKCGKSFHNKARLKRHISSHRNKSVMCEICHEEFPDGRQLMNHRHSHTKANQFPCHECGKTFGSRSSQQIHLRIHTGERPYACRYCWKAFADGGTLRKHERIHTGEKPYCCLVCPRAFNQRVVLREHIRSHHSAPDSQHGTTLTPYYCSLCGDLFSVSLDLIHHLIEHSDRSTAAKRVQPTGPRKYKRRRKLNGESNDNDFITLEGNFTRFQKSIKEEPLDYDNTIIATKKLLSSNASSILPLPSDFIFADSEFKLPDEIFQTATKKYPKVSSPSRPKMIYTQKTRVQATHGKRKTKTMIQKRVLSRTTRLSRQRQQQLQQQKPVKQSIDEYESMESESWSNDDPNEDVLDTLLKRERKLSEKFTSDLVNDLQEILRSPIKMPEEKKPPNGDTGMNRRPVFTSYGAIAPESLSTIFGSPNKDNQLLDDDEIENIVIKKEIFDDGHLCGICGDSFETRAQLLSHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -