Paka013153.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Propsilocerus akamusi
Gene Symbol
-
Assembly
GCA_018397935.1
Location
CM031471.1:4465754-4469021[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 5.2e-05 0.0025 17.9 0.3 1 23 230 252 230 252 0.98
2 14 3.7e-05 0.0018 18.4 4.2 2 23 259 280 258 280 0.97
3 14 0.0044 0.22 11.8 0.3 2 23 285 307 284 307 0.95
4 14 0.0038 0.18 12.0 3.9 3 23 335 355 334 355 0.97
5 14 0.1 4.9 7.5 2.6 1 23 449 473 449 473 0.96
6 14 0.0034 0.17 12.2 0.7 2 21 483 502 482 503 0.93
7 14 0.31 15 6.0 0.4 3 23 514 535 512 535 0.88
8 14 4.3e-07 2.1e-05 24.4 1.8 1 23 544 566 544 566 0.99
9 14 3.1e-08 1.5e-06 28.0 1.4 1 23 573 595 573 595 0.98
10 14 1.3e-07 6.1e-06 26.1 1.1 3 23 607 627 605 627 0.96
11 14 6.7e-05 0.0033 17.5 2.8 1 23 633 655 633 655 0.99
12 14 9.9e-07 4.8e-05 23.3 2.2 3 23 663 683 661 683 0.97
13 14 1.1e-07 5.4e-06 26.3 1.3 1 23 689 711 689 711 0.99
14 14 0.0049 0.24 11.6 0.1 1 23 717 741 717 741 0.93

Sequence Information

Coding Sequence
ATGGAAGAGATATCAGATATTAAGCGAGATTTTAATATCAGCAGAATGTGTAGATCATGCTTGATTGAGACAGATGAAGAAATGATTGAGATATTTTCGAACAGCGATGAATCTAATAGCTTAAATTTAAGTCAGGTTTTGAAGCTAATATCAACAAATGTTCAGATTGAAAGAAATGACGGACTTCCTGATAAACTATGTAAAGAATGCACGGAGAAGGCATATCAGACCTACAGTTTCAAGGCCACCATCGAACAGAGCGATTCAACATTACGGAGCTTATTCAAGAACCAAAATGATTCCATCAAAAAGGATCCAGCGTTTGATGACACCAGCAATTATTTGATGGGAATAAAAACGGAAATTGCATTTGTCGATGCTGATCCCTTTATTGATGATGGTGATTTTGACGGGTCTATTGATTATGCTGAGAACACCAATGTTTCAAATCAGCAAAATGAATCGTACAGTAGTAGTAATAATAATAACAACAACACCTATCCACAAAATGCCGACGAACCGAAGAATCCTGAATCAGAAACAGATGATGAGGATGATGGTGAAGATGGCTCTGATGAAAATTACAGCTTGAAAGTGCAACGAGAGAAGCTCAAAAAGAAATTTCCTGAAATGCCACCGGCAAAGAACTTGGAAAATGTTGAATACATTAAAGATGAGGAAGGAAAATATGTTTGTCAGATATGCAATAAGAAGCTAGTCGATAAAAAAGGGCTGAATCTGCATATTCGTTTACATACTGGTGAGAACTTGAAGCGGTGTCACATCTGTAATCGTGGCTTCATCAAAAGCGACCATCTGCGGAGGCATTTGCTGATTCATGAGCGTTCTGTGAGTTGCGAATACTGCGATGATAGCTTTGTATCACGGAATGAATATAAAACACATTTAAAAGAGGAGCATGAGGACGAATATCTGGTTGAAGCTGACCGATCAGCTTCTTCGAAGAATCAGCGATCTCGTGGAACGCATTTGAGTGCTATTTGTAAAATTTGCGATAAAAAATTTCAACGAATTTGTACATTAAGAACTCACCTCAACCAGCACCTTATGTCAAATACATTCGATGATGCCGATATCAAAAACAAAATATTTCTTTTTAATCCACTTGAAGTGGACCTAGAGAAAGCTGATCAGGATGAGCTTCATAATTATATCAAAGAGAAACTGAGTCAAAATGAATGTGAAAAGTTTTATCAGATAATGACACGGGATGGACATGAAATGCTGCTAAGTGATTCAGAAACAGAAGATGAAAATGAAACAGGTCCGCCCGATGATCGCATTGAATTGACGCTTGACCAAAATGAAATTCCAAAGAAATTCTACAATTGTACCAAATGTCCTGAAAGAATGTTCAAGCGAAGCAAAGAAACATTGCATCACATGATGCTGGATCATCTACATGATGCTCATGAATTTATCGATAGATGTGCGAGTTGTAATCAAACATTTCCCAATGCCTATACACTTCACAAACATTTAAAATCACAATGCGAGAGCAAAGCGAAAAAGTTGGCATGCAATACATGTGGCCGGAAGTTCATGTGGCTTGATTCAATGGCTAAGCACATTGAACACGAACATCCAGGAACCGAAAAAATAAAATTGTATACTTGCGAATTGTGTGGTAAAGCATTTTCTCGTGGTGAGCATCTTGAGCGTCACCGGAAGACGCACAATCCGTCAGAGAAAAAGTTCGAATGCCCCGTTTGTCAGAAAAAGTTTAATCGAAAGGATAATTTACGATCACACATGAAGATTCACAAGGACAATCGAGACGACGAAGACAAACATCTTTGTGTTTATTGTGGTCGTGCCTTCAGTAATTCATCTAATTTGATAGTTCATATGCGTCGTCATACTGGGGAAAAACCATACAAATGTGATTTATGTGAGAAGGGATTTCCACGATCTTCTGATCTTCAATGCCACCGTCGCACTCATACCGGGGAAAAGCCTTGTCTATGTACAATTTGTGGCAAGGGATTCTCTAGATCTAATAAACTTGTGAGGCATATGCGAATTCATTCTGGTGTCCGTCCTTATCAGTGCACATACTGTGATCGTGCCTTTACACAGTCGAATGATTTAACTTTACATATCCGCAGACACACTGGAGAGAAGCCTTACGTCTGCGGAGTGTGCGGAGATCGATTTATACAAGGCACCGCGTTAAAGCAGCATCAACGAATGCAAGGCCATTTTGAGGGCTCGCAACCAAGTCCTTATGCTAGCATAAGTGTCAATAATCCAAGTCGTTTCACTAATTCGAATCTCGTGAATCGACGTTATTGTGCTGAAAATCCTCAGCAGTCAAATCAAGTTTCACCAATGGCTATCAAACCGGTTATACCTCGGAGACGGACAATTAACAATGCCGGCACGTCATCACAATTGAATCAAATGATTCATGATCAAATTATACCGACGAGTAGTGCCATTAATCATTCAAATATTAATCAAGACACAACGTCCGATGGTATAAGCATGCGATCATCATCTCCACATCATTCATCAGCGTCCACTCCAATACCGAACATGTCTCAGGTAGACATTAAGCCAAACATTCAAAATTTAAATATACCATATAATGGAACGCTTCATCCAACAATGGGAAACATGCCCAACATGGAAATTGCTACGCTATTCACAATGTCCTTCAATCAAAATTTTAATCAATCGAACAACAATTGA
Protein Sequence
MEEISDIKRDFNISRMCRSCLIETDEEMIEIFSNSDESNSLNLSQVLKLISTNVQIERNDGLPDKLCKECTEKAYQTYSFKATIEQSDSTLRSLFKNQNDSIKKDPAFDDTSNYLMGIKTEIAFVDADPFIDDGDFDGSIDYAENTNVSNQQNESYSSSNNNNNNTYPQNADEPKNPESETDDEDDGEDGSDENYSLKVQREKLKKKFPEMPPAKNLENVEYIKDEEGKYVCQICNKKLVDKKGLNLHIRLHTGENLKRCHICNRGFIKSDHLRRHLLIHERSVSCEYCDDSFVSRNEYKTHLKEEHEDEYLVEADRSASSKNQRSRGTHLSAICKICDKKFQRICTLRTHLNQHLMSNTFDDADIKNKIFLFNPLEVDLEKADQDELHNYIKEKLSQNECEKFYQIMTRDGHEMLLSDSETEDENETGPPDDRIELTLDQNEIPKKFYNCTKCPERMFKRSKETLHHMMLDHLHDAHEFIDRCASCNQTFPNAYTLHKHLKSQCESKAKKLACNTCGRKFMWLDSMAKHIEHEHPGTEKIKLYTCELCGKAFSRGEHLERHRKTHNPSEKKFECPVCQKKFNRKDNLRSHMKIHKDNRDDEDKHLCVYCGRAFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHSGVRPYQCTYCDRAFTQSNDLTLHIRRHTGEKPYVCGVCGDRFIQGTALKQHQRMQGHFEGSQPSPYASISVNNPSRFTNSNLVNRRYCAENPQQSNQVSPMAIKPVIPRRRTINNAGTSSQLNQMIHDQIIPTSSAINHSNINQDTTSDGISMRSSSPHHSSASTPIPNMSQVDIKPNIQNLNIPYNGTLHPTMGNMPNMEIATLFTMSFNQNFNQSNNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-