Paka007096.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Propsilocerus akamusi
Gene Symbol
-
Assembly
GCA_018397935.1
Location
CM031468.1:23617287-23620145[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4e-06 0.00019 21.4 0.2 3 23 189 209 188 209 0.98
2 16 0.002 0.098 12.9 0.4 1 23 215 237 215 237 0.93
3 16 1.4e-05 0.00068 19.7 0.7 3 23 245 265 244 265 0.97
4 16 0.0003 0.015 15.5 8.7 1 23 271 293 271 293 0.96
5 16 1e-05 0.0005 20.1 7.6 1 23 299 321 299 321 0.98
6 16 4e-07 1.9e-05 24.5 2.2 2 23 328 349 327 349 0.97
7 16 1.1e-05 0.00054 20.0 7.4 1 23 355 377 355 377 0.96
8 16 1.9e-05 0.00095 19.2 2.6 1 23 383 405 383 405 0.97
9 16 8.3e-06 0.00041 20.4 6.0 1 23 411 433 411 433 0.98
10 16 0.00012 0.0059 16.7 9.8 1 23 439 461 439 461 0.97
11 16 7.7e-06 0.00037 20.5 3.6 1 23 467 489 467 489 0.98
12 16 2.6e-06 0.00013 22.0 6.3 1 23 494 516 494 516 0.98
13 16 2.4e-06 0.00012 22.1 4.2 2 23 522 543 522 543 0.98
14 16 3.5e-05 0.0017 18.4 6.2 1 23 548 570 548 570 0.98
15 16 0.0025 0.12 12.6 3.0 2 23 576 598 575 598 0.94
16 16 1.6e-05 0.0008 19.4 0.7 1 23 604 626 604 626 0.98

Sequence Information

Coding Sequence
ATGAATGATCGATCAATGAAGCAGGAATCATACGATACAGCAAACAAGACCGGTGGTGGTACACAATTTGGAAAATATTTGTTTCTGTTTCCGAAGCCACCAGACACGGTATTCCAGGGCGAACCGACGTATTTGTTTCATGGACAAAATGTTATATTCAATTCAATTGAGCCATCAACATCACTCGGAGCCATAAATGTTCAGCAGCCCCATGCATTTGATGCTAAAGAGGCGCATCGGGCGCATTATAATCAACAAATTTCAGGAAGCCATTATGACAATGCTGCATCGGAAAATGCTATGAAACCACAACATAAGGAAGATGATAAAACTGCAATGCGATCAACCATTCAGCATACATCCAATTATGATACATTAAATAAGATCAACGTTGAAGACATTAGTCAATTCTTATCGTACCATGAGGTTTTTGGGAAAATTACAAATACATGCGATATACAACCTCCATCAGCCGCTGTTTCAGCAGAAAAAGATGTTCATCAACCCAAAACAGAGAACAATTCCATTGATCATACATTGAATCAACTGCCCTCCAATAACGCATGTCCCGTTTGTGGAAAAATATTTCAGTATCGCTATCAATTGATCGTCCATCGACGGACACACGATGATAAGAAGCTTTTCTTATGTCAAGTATGCGGCCAAGCTTTTTCATCACATATTGAGCTCTCAAGTCACGGAAAAGCTCATGAAAATTCCAAGATGGCCATTTGTACAGTGTGTTTTAACGTCTTCGCAAATCAATCTAGTCTCGAAAGGCACATGAAGCGTCACGCAACCGATAAGCCGCACGCTTGTCACATTTGCCATCGTACATTCAACAGGAAAGAGCATCTTGATAGTCATGTACGATCTCATTCGGGTGTTACCCCATTTCGTTGCAATACGTGCGGAAAATGCTTTAGCAGGAAAGAGCATTTGGTTAATCATTCGAAGAAGCATAGTCCGGATGCTAGCGATCGATGTAATATATGTGACAAAACATTTACGCGCCGTGAACATTTGATAAATCATCAGAATTGGCATAACGGAAATACTCCTCATGCTTGCACAATATGTCATAAGAAATATACTCGACGTGAACATCTTGAGAATCACATGAGAAGCCACACGAAGGAGACACCTTTTAAATGCGAGCTCTGTTCGAAGGCGTTTTCAAGGAAGGAACATTATACAAATCACGTCTTATGGCATTCGGGTAACACACCCCATAAATGCGATATCTGTAATAAATTCTTCACCCGAAAAGAGCATCTTTTAAATCACGTGCGGCAACATACCGGCGAGTCTCCCCATCGTTGTTCTTACTGTCAAAAATCTTTCACTAGACACGAGCATTTGAAAAATCATGAAAGACAGCACACGGGTGAAACGCCCTTCGTATGTTCATACTGCCAGAAGGCATTTTCGCGAAAGGATCACATGCTTAACCATACGCGGCTTCATACTGGCGAGCATTTTAAATGTTCTTATTGCACCAAAACTTTTACTCGAAAAGAGCATCTCAATAATCACGAGAGACAACACTTGGGAACAAGCCCGAAATGTGTCTACTGCAACAAAAGCTTCACCAGGCGTGAACATCTTAATAATCATTTGCGACTTCACACGGGATCTCCATTCAAATGTGAACTATGTAATCGTACATTTACAAGAAAAGAACATCAAAAAAATCACATGAAACAGCACAACGTAGATTCGTTAAATTGCCATATCTGTAGTCAGATTTTCGAATCCAAAGAGCTGCTTCTTCAGCACATGTCAAACTGCCATCAATCTGATCGTCCCTTTAAGTGTGAGGAATGCGGAAAATCATTCCCGTTGAAAGGAAATTTATTGTTCCATCAGCGAAGCCACAACAAAGGCCAATTGAAGAATCCAAGAAAAACTCCAGCTGAAAAAGCTGAAAAGGCCGCAGCAAAAATTAAGAAATTGATTCCCGAAAATATTGCACAATGTGTTATAGTACCCAATGAAGGTCTCAAGGCAGAAAATTCGCATGTCGTTCAGCAGCATTATCACGAGATGCATCAGACAGCAGCTGCAGCTAACATGCATCATCATGGCGGCCAAGCCGATCCACGACAAGAGCATTCCATTGCATATTAA
Protein Sequence
MNDRSMKQESYDTANKTGGGTQFGKYLFLFPKPPDTVFQGEPTYLFHGQNVIFNSIEPSTSLGAINVQQPHAFDAKEAHRAHYNQQISGSHYDNAASENAMKPQHKEDDKTAMRSTIQHTSNYDTLNKINVEDISQFLSYHEVFGKITNTCDIQPPSAAVSAEKDVHQPKTENNSIDHTLNQLPSNNACPVCGKIFQYRYQLIVHRRTHDDKKLFLCQVCGQAFSSHIELSSHGKAHENSKMAICTVCFNVFANQSSLERHMKRHATDKPHACHICHRTFNRKEHLDSHVRSHSGVTPFRCNTCGKCFSRKEHLVNHSKKHSPDASDRCNICDKTFTRREHLINHQNWHNGNTPHACTICHKKYTRREHLENHMRSHTKETPFKCELCSKAFSRKEHYTNHVLWHSGNTPHKCDICNKFFTRKEHLLNHVRQHTGESPHRCSYCQKSFTRHEHLKNHERQHTGETPFVCSYCQKAFSRKDHMLNHTRLHTGEHFKCSYCTKTFTRKEHLNNHERQHLGTSPKCVYCNKSFTRREHLNNHLRLHTGSPFKCELCNRTFTRKEHQKNHMKQHNVDSLNCHICSQIFESKELLLQHMSNCHQSDRPFKCEECGKSFPLKGNLLFHQRSHNKGQLKNPRKTPAEKAEKAAAKIKKLIPENIAQCVIVPNEGLKAENSHVVQQHYHEMHQTAAAANMHHHGGQADPRQEHSIAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-