Paka013331.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:5445586-5447594[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.017 0.83 10.0 6.5 1 23 72 94 72 94 0.98 2 19 0.55 27 5.2 0.0 8 22 107 121 100 121 0.91 3 19 2.1e-05 0.001 19.1 0.4 1 22 128 149 128 149 0.96 4 19 6.6e-05 0.0032 17.5 1.2 1 23 156 178 156 178 0.98 5 19 2.6e-06 0.00013 22.0 4.0 1 23 184 206 184 206 0.98 6 19 7.8e-07 3.8e-05 23.6 1.2 1 23 212 234 212 234 0.98 7 19 2.6e-06 0.00013 21.9 4.5 1 23 240 262 240 262 0.98 8 19 2.6e-06 0.00013 22.0 4.0 1 23 268 290 268 290 0.98 9 19 3e-05 0.0015 18.6 0.7 1 22 296 317 296 317 0.96 10 19 1.4e-06 6.8e-05 22.8 1.0 1 23 324 346 324 346 0.98 11 19 1e-05 0.0005 20.1 1.3 1 22 352 373 352 373 0.96 12 19 7.8e-07 3.8e-05 23.6 1.2 1 23 380 402 380 402 0.98 13 19 1.1e-06 5.3e-05 23.2 2.5 1 23 408 430 408 430 0.98 14 19 2.6e-06 0.00013 22.0 4.0 1 23 436 458 436 458 0.98 15 19 3e-05 0.0015 18.6 0.7 1 22 464 485 464 485 0.96 16 19 7.8e-07 3.8e-05 23.6 1.2 1 23 492 514 492 514 0.98 17 19 7.6e-08 3.7e-06 26.8 1.6 1 23 520 542 520 542 0.98 18 19 2.2e-06 0.00011 22.2 1.0 1 23 548 570 548 570 0.98 19 19 1.8e-06 8.9e-05 22.5 1.3 1 23 576 598 576 598 0.98
Sequence Information
- Coding Sequence
- ATGGGACTGCGAAAGACTGATGCAATAGATCTAACGAGTAATAATGCATCAACCAGCACGGCAGCTAAAAATAAAAACGATGACTTCTATGCGGACCTTATTAAAAATGATACCGTTTTTCATGAGTGGCTTGAAAAAGACTGGCATATGACCCATATGACCAGTGAAACTACAGAAAATGCAGAAAAGGGTTTAAGTCCTGTGAAGCCTTCATTTAAGTGCGATGACTGCAATCAAATTTTCATGACGCACCATGGTTTAAACTATCATCGACACATACATTCTGGAAAAAAACCGTTCACCTGTGCACTAGGCGAAAAATCTTATCCCAGTAAGGAACAACTAACTTCGCATGTAAGAACACAGACTGGGGAAAAACCGTTCAGCTGTGAACTGTGCGACAAATCTTATCCCAGTAAGCAACAACTAACTTCGCATGTAAGAACACAGACTGGTGAAACACCGTTCAGCTGTGAACTGTGCGACAAATCTTATCCCAGTAAGCAACAACAAACTTCGCATGTAAGAACACACACTGGTGAAAAACCATTCAGTTGTGCATTATGCGAAAAATCTTTTCGAAGTAAGCAACATTTAACTTCGCATTTAAGAACACACACTGGTGAAAAACCGTTCAGCTGTGAACTGTGCGACAAATCTTATCCCAGTAAGCAGCAACTAACTTCGCATTTAAGAACACACACTGGTGAAAAACCGTTCAGCTGTTCATTATGCGAAAAATCTTTTCGAAGTAAGCAACATCTAACTTCGCATGTAAGAACACACACTGGTGAAAAACCATTCAGCTGTGCATTATGCGAAAAATCTTTTCGAAGTAAGCAACATTTAACTTCGCATTTAAGAACACACACTGGTGAAAAACCATTCAGCTGTGCATTATGCGAAAAATCTTTTCGAAGTAAGCGACAACTAACTTTGCATGTAAGAACACAGACTGGGGAAAAACCGTTCAGCTGTGAACTGTGCGACAAATCTTATCCCAGTAAGCAACAACTAACTTCGCATGTAAGAACACACACTGGTGAAAAACCGTTCAGCTGTTCATTATGCGAAAAATCTTTTCGAAGTAAGCAACAACTAACTTCGCATGTAAGAACACAGACTGGTGAAAAACCGTTCAGCTGTGAACTGTGCGACAAATCTTATCCCAGTAAGCAGCAACTAACTTCGCATTTAAGAACACACACTGGTGAAAAACCGTTCAGCTGTTCATTATGCGAAAAATCTTTTCGAAGTAAGCAACAACTAACTTCGCATGTAAGAACACACACTGGTGAAAAACCATTCAGCTGTGCATTATGCGAAAAATCTTTTCGAAGTAAGCAACATTTAACTTCGCATTTAAGAACACACACTGGTGAAAAACCATTCAGCTGTGCATTATGCGAAAAATCTTTTCGAAGTAAGCGACAACTAACTTTGCATGTAAGAACACAGACTGGGGAAAAACCGTTCAGCTGTGAACTGTGCGACAAATCTTATCCCAGTAAGCAGCAACTAACTTCGCATTTAAGAACACACACTGGTGAAAAACCGTTCAGCTGTTCATTATGCGGAAAATCTTTTCGAAGTAAGCAACAACTAACTTGGCATGTAAGAACACACACTGGTGAAAAACCGTTCAACTGTGAACTGTGTGACAAATCTTATCCCAGTAAGCAACAACTAACTTCGCATGTAAGAACACACACTGGTGAAAAACCGTTCAGCTGTGAACTATGCGACAAATCTTATTCTAGTAAGCAGCAACTAACTTTGCATGCAAGAACACACACTGGTGAAAACCCGTTCATTCAAAGCCATGCATGTACGAAAAATCTTTTCGAAGTAAGCAGAAACTTACTTGCCATGTAA
- Protein Sequence
- MGLRKTDAIDLTSNNASTSTAAKNKNDDFYADLIKNDTVFHEWLEKDWHMTHMTSETTENAEKGLSPVKPSFKCDDCNQIFMTHHGLNYHRHIHSGKKPFTCALGEKSYPSKEQLTSHVRTQTGEKPFSCELCDKSYPSKQQLTSHVRTQTGETPFSCELCDKSYPSKQQQTSHVRTHTGEKPFSCALCEKSFRSKQHLTSHLRTHTGEKPFSCELCDKSYPSKQQLTSHLRTHTGEKPFSCSLCEKSFRSKQHLTSHVRTHTGEKPFSCALCEKSFRSKQHLTSHLRTHTGEKPFSCALCEKSFRSKRQLTLHVRTQTGEKPFSCELCDKSYPSKQQLTSHVRTHTGEKPFSCSLCEKSFRSKQQLTSHVRTQTGEKPFSCELCDKSYPSKQQLTSHLRTHTGEKPFSCSLCEKSFRSKQQLTSHVRTHTGEKPFSCALCEKSFRSKQHLTSHLRTHTGEKPFSCALCEKSFRSKRQLTLHVRTQTGEKPFSCELCDKSYPSKQQLTSHLRTHTGEKPFSCSLCGKSFRSKQQLTWHVRTHTGEKPFNCELCDKSYPSKQQLTSHVRTHTGEKPFSCELCDKSYSSKQQLTLHARTHTGENPFIQSHACTKNLFEVSRNLLAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -