Paka013175.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:4562184-4564253[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.013 18 4.8 0.0 19 35 43 60 33 68 0.66 2 3 0.0044 6.5 6.3 0.0 13 40 170 197 166 199 0.86 3 3 0.003 4.4 6.8 0.0 23 43 362 382 350 383 0.89
Sequence Information
- Coding Sequence
- ATGTCAGACGACGAAGACTGCTTTGAGAATGCCAAAATGAGGATAAGCAATAAAAGGAAGCATATCACACTAACGATAGAAGAAAAAGTAAACATAATTAATATGATTGAATCAGGAACACATTCAAGACAAGCAATTGCAAACATATACGGTATAGGCAAGTCGACCGTTCATGACATTCACAGGAAGCGTAATCAGATTCGACAATTTGCTGAGATGACCAATGATATTTCTAAGAGAAGAAGAGTTGATACAAAAAAGGACAAGACGCCTGTGATGAAAACAGAGGACATAGAATTGCATGAAGAAATAATTGAAGATTCGAGGCTTAACGGCGATTTTGATTACCAAGCTCTTGATGAAGATGGACAAGATAATTACGAAGTTATTTATGAACCAGATATCAAAAATGAACAACAAGAATCATTGCTGATTGACTCATCCTTCCATTCTGGAAAGAAAAAGACAACATTAACGATACGAGAGAAATATGACATAGTGAAAATGATTGAAGGCGGAACAAGTGTGCCAGAAGTCTGTTCACTGTACAATATTGGAAGGACAACCGCATACGATTTTTTGAAGCGGAAGCAAGCATTCATTGATTTCATTGAAAATTCTAGCAATGACGGTTCAAATCGCCGAACACTAAAACAGTCAAAATTTCCGATTATCGAAGAAAATATGGTGGAATATTGTGAAACGACGCATCATTTTACAAAACAACAGTTCTTTGATACACTAAAAATATTTTCTAGTAACTTCAAGTCAGAATTTTGTGGTGCTTGGTCGTGGAGTAAACGGTTCTTTCACCGCCATCCGGAATATAGACAAAAACTGATAGGTGATAATGGAAAATCAATTAAGGATATCACATTTCTTGATGACAATGCTGAATATCTTGATGACGAAATAGAAAACGGTAGAGCGAGCGAGAAAATGCAGTTAAGAGAGATCAAAGAAAAGTTCAGTAATTCCCGTCTTGAGAATCCTGGCGATAAAAAGCCATACAAATATCTAAATTTGGGTGAGAAGCTCCAAGTCTTGAATGAAATTGACAATGGGGTTAATATTCACATCATTGCTGATCGACATGATGTATCAAAATCGACTGTATATGAAATCTTCAAGCGCCGTGAGGAGCTACGCGATGTTAAAAAGACAAAATCAAATATCATGCGAAAGGTTATGAAGATTCCCCGATTTCCCGAGCTGGAAAAGGAACTTCTGAAATGGTGCATGAGGCAAAAGAAATATCCTCTTAGTAATGTTCTTATAGCAGATCAAGCGCTATGCATGTTTTGCGAGATGGGCCTGGAAGGAAAATTTAATCCATCATCAACATGGGGAAAGAACTTTTCTTTACGCTATCCGGAATTGCGTGCCAAACAAGGTATACCAGATGAAGATGAAATTGATGAAACTGAATTTGATGAAACATTTTTACAAAATGGCCAAGAAAATGAAGATATTGAAAGTGAAGAAACAATAGAGGACTCAGAAGAGAACTCAATGCCATTTGAATTCCTTGATCCTGAGAATCCTGAATACGTTGAAGAAATACTCGAACCAGAGAACTGCATTATAGAATCATTTGAATCCACTAATCCATCAAGTGTCATTGAGAAGGATGACATTTTGGTTAATACTATTCCAGAATCGCACATCAAAAATAATGAAAGACTTGCACCGAGCGAGCCGGCAGTGATCAAACTTGTTCCAGATTCAATTGCACTCAAGAGTCTCAATATTCTAATAAAATATTCGAAACAACGCGGAAAGTCAAAATATTTGCAAAATCTTTTGGAATACAAAAATGAATTTGAGCAGCATGATTTAGAGCTTGAAGAATCGTAA
- Protein Sequence
- MSDDEDCFENAKMRISNKRKHITLTIEEKVNIINMIESGTHSRQAIANIYGIGKSTVHDIHRKRNQIRQFAEMTNDISKRRRVDTKKDKTPVMKTEDIELHEEIIEDSRLNGDFDYQALDEDGQDNYEVIYEPDIKNEQQESLLIDSSFHSGKKKTTLTIREKYDIVKMIEGGTSVPEVCSLYNIGRTTAYDFLKRKQAFIDFIENSSNDGSNRRTLKQSKFPIIEENMVEYCETTHHFTKQQFFDTLKIFSSNFKSEFCGAWSWSKRFFHRHPEYRQKLIGDNGKSIKDITFLDDNAEYLDDEIENGRASEKMQLREIKEKFSNSRLENPGDKKPYKYLNLGEKLQVLNEIDNGVNIHIIADRHDVSKSTVYEIFKRREELRDVKKTKSNIMRKVMKIPRFPELEKELLKWCMRQKKYPLSNVLIADQALCMFCEMGLEGKFNPSSTWGKNFSLRYPELRAKQGIPDEDEIDETEFDETFLQNGQENEDIESEETIEDSEENSMPFEFLDPENPEYVEEILEPENCIIESFESTNPSSVIEKDDILVNTIPESHIKNNERLAPSEPAVIKLVPDSIALKSLNILIKYSKQRGKSKYLQNLLEYKNEFEQHDLELEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -