Paka000496.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- lola
- Assembly
- GCA_018397935.1
- Location
- CM031470.1:1421485-1423115[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-08 4.2e-05 22.9 0.0 5 39 433 466 431 472 0.84
Sequence Information
- Coding Sequence
- ATGCAACAACAGTATTGCGTTCGCTGGAATAATCATCTGAAGATTTTCCAAACGGCTTTGCCAAAGTATTTCCAAAATCAAAAATTTCTGGATGTAACACTCGTTGTTGAAGATGGAAAACATTTGGTTCCATGCCATAAAATGGTACTTGACGCTTGTTCCGATTACTTTGCAAACTTTCTTAAGAACAAATTGCTGGAAGATAAAAATTTGGTGATATGCTTGCCAAAGGAAATTCGCTTGTGGGAAATTCAAGCAATTTTGCAATTTATGTATCATGGAGAGGTATGCATTTCGCAAGAGGGTCTGCCCAGTTTGGTTAAATGTGCGGAAATGCTGCAGGTCAAAGGCCTCTGCGGTAATGAAACAACGTCAATCACGTCTACAAATAACAATAGTGACACTAGTCAACAAGTTTCACAACTAGTAACTTCGTGCAATAATGAAGAATCTGAAACAAATGAGAGCCCATCGAAGGCATTGAATGGCGAGGATGCAATTGAAATTGATGAAACCGAAAGTGAATGCGAATTTAACGGCCAAATGAGAGTAAAGCGTGAACTAAGCATAAGTGACAATGAAAATGCAAATGTTGAAGATGATATGATGGAAGAATGTGAGACTGAACAAAATTCGTCATCAGCAACTATAACGCGGCCATCTACGTCCGTAGGCCTTATTAGAGTCAAGCGAAATCTTTTTGAAAACGCAACCATCAACAACGATCTCAATAAGTCAGGATCTGAAATAAAAACTGCTGAAGAAGTTAACAAATTGATTTATAACAAAAACTCGATGGATATTTACGTAAAGGCCAAAAATTCTGAAGGTGATGTTTCACGCAGTTCAAGTCCTTTGTTGCGTGCAAAAACACCAGATGGACAATATGAATCGATTGTGTGTTCTCCTACATTGCTGCATTATATCTCAGATGATGGCGATAAGGAAGACAATAGTTTCAAGAGCAGTGATCATGCAGATGATATGGTCGAGGAAGATGACGATGATGATATCTTCATTGAACAGGGAAATATTTGCACTAATGATGCACTTTATGAGCTCATAAGTAAAAATTTTGTCAACGGTGATCAATTTTCGCTGGTCGAGGGCAATGGTACAGGCCTTAACAGTAATCTCTTGATATCATCGGTAAGTAGTTTGAATCAACAACTCAACGAAGATGTCAAGAATGTCAAAATAATTCATAAGACCAGTTCGGATAAAAAAGTAGCAATCAGTGGTCTTTACTTGAGAAATCCAAGAGGAAATCAAGTTCGACAATATGATGTAAATGCATTGTACAGTGCTTTACAAGACGTGAAAAATGGTCACAGTATTTATAGAGCCGCTCAAACATACAACATCCCACGTAAAACGCTAAGAAACTGGATGAAACGCTTATCCATCAAATCACAGTATCCAATGCCAAAGCAATTGGCTCAAGCAGCTGAAAGAAAGAAAACCCTAAAGAAGTCATCAACGATCATCATGAAAGCTATTTAA
- Protein Sequence
- MQQQYCVRWNNHLKIFQTALPKYFQNQKFLDVTLVVEDGKHLVPCHKMVLDACSDYFANFLKNKLLEDKNLVICLPKEIRLWEIQAILQFMYHGEVCISQEGLPSLVKCAEMLQVKGLCGNETTSITSTNNNSDTSQQVSQLVTSCNNEESETNESPSKALNGEDAIEIDETESECEFNGQMRVKRELSISDNENANVEDDMMEECETEQNSSSATITRPSTSVGLIRVKRNLFENATINNDLNKSGSEIKTAEEVNKLIYNKNSMDIYVKAKNSEGDVSRSSSPLLRAKTPDGQYESIVCSPTLLHYISDDGDKEDNSFKSSDHADDMVEEDDDDDIFIEQGNICTNDALYELISKNFVNGDQFSLVEGNGTGLNSNLLISSVSSLNQQLNEDVKNVKIIHKTSSDKKVAISGLYLRNPRGNQVRQYDVNALYSALQDVKNGHSIYRAAQTYNIPRKTLRNWMKRLSIKSQYPMPKQLAQAAERKKTLKKSSTIIMKAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01257255;
- 90% Identity
- iTF_01257255;
- 80% Identity
- iTF_01257255;