Paka012414.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:346474-347931[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5 5.1e+03 -3.0 0.1 1 10 273 282 273 285 0.80 2 3 0.00043 0.63 9.5 0.0 8 35 305 331 303 335 0.87 3 3 7.1e-10 1e-06 28.0 0.0 2 38 358 393 358 398 0.93
Sequence Information
- Coding Sequence
- ATGTCGTTCGTTATTAATACAACGATTGATAAGACTCAGGAGCTGCTGGACGCTTACAAAGATACGTTCGAAAATGACCAGTCTAAAGACGTTTTCCTGATTTGCAAAGATTCAAAGATTCCAGTTAATTCCTTCGCTCTAGCGCTAAGCAGTGACTTCATGAAGCAATTGCTAATGGAAAATCAACGTGAAATCATCAATATTGTAATACCAGAGGTAGATCCCGATTTGCTGGCGAAGGTTGTTGAATACATTTATATAGGAAATACTTTCATAGATCCAAGAAAAATGGCGGACTTTATTGAAATTTGCAATCTGCTACAGTTAAAAGCGACAATATCTTGTGAAAGGAAGTTGGTATTTGATAAACCTGTTACTACTGATGCTTTTGCTCCATCAACATCAACAGCTTTAGCCATAACAGGATCACAACATGCTGCTAGTGACAACGTTGACAGCAATACAACTAATGTCACACGTCAACAGAATCTTGATTCATTAATAGCTGATTTGGAAGAAACTCCAAAATTCAATGATGATGGCGATGATGAAGATTCAAGTTACGAATTGAAGGATAAAGATATTCAGGAACCAAATCAGATTTTGGAAGTTTACGAGATTTCAAACATTGAAGAAGACATGACATACGAGGATGAGGATATGGAATCCGAGGAGCATTATGAACTGATGAACGTCATTGAGCCAAAAGTAGAAACATCAGAACCAAAATCAGTCAAAAAAAAAGAGTGCAAAACCGATACCATGGAGTACTACGAAGTATCTGAAATCAAACCGCGTATACCAGCAAAGCAAGTTGATGAAGAAATTTTGAATGCTGCCCTCGGCGAAATCATTGCAATACCAGCAGTTTTCGGGTTGTGTGAAAAACAGAAGGACTCAAACAGATTACAAGCCATTGAGGCAATCAAACATGGCGAGAGTCTCATAAGTCTCAGTAAACGCTTCAATATTCCAATTTCTACATTACATCGGGAGAAACTGAAGTTATTTGAGAATGGTCAACTGCCGGATTCCGTCAATCTTAAGAATCGTTCTCGAGGAGAGGACTTTGACGATCGCATGCGAAATGCATTAGCTGAAATTCTGAATGGCAAGAGTCAGAATGAAGTTGCCAAGAAGTATAAGATCCCGAAAACTACACTCTGGAGGCTTTTGAGGAAGATGGCTCCTGCCACAAAACCTGATAATGTTCTAGTAGCAGCCGATTCTGACGTCGTGACACAATTGCTGACGCAAAGTAAGAAGCGCCAATCAATCAAAGAAGAAATTGATGATTCTGATCAAATCCCTTTAAAAATTTTGTCGACATGA
- Protein Sequence
- MSFVINTTIDKTQELLDAYKDTFENDQSKDVFLICKDSKIPVNSFALALSSDFMKQLLMENQREIINIVIPEVDPDLLAKVVEYIYIGNTFIDPRKMADFIEICNLLQLKATISCERKLVFDKPVTTDAFAPSTSTALAITGSQHAASDNVDSNTTNVTRQQNLDSLIADLEETPKFNDDGDDEDSSYELKDKDIQEPNQILEVYEISNIEEDMTYEDEDMESEEHYELMNVIEPKVETSEPKSVKKKECKTDTMEYYEVSEIKPRIPAKQVDEEILNAALGEIIAIPAVFGLCEKQKDSNRLQAIEAIKHGESLISLSKRFNIPISTLHREKLKLFENGQLPDSVNLKNRSRGEDFDDRMRNALAEILNGKSQNEVAKKYKIPKTTLWRLLRKMAPATKPDNVLVAADSDVVTQLLTQSKKRQSIKEEIDDSDQIPLKILST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01257288;
- 90% Identity
- iTF_01257288;
- 80% Identity
- iTF_01257288;