Paka012412.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- -
- Assembly
- GCA_018397935.1
- Location
- CM031471.1:343687-345259[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.7e-08 8.3e-05 21.9 0.0 2 40 257 295 256 300 0.90 2 3 2.5e-07 0.00036 19.9 0.0 3 44 355 396 354 397 0.91 3 3 1.9e-06 0.0028 17.0 0.0 5 39 438 471 437 477 0.90
Sequence Information
- Coding Sequence
- ATGTCGGAGCAGACTTCAATCTTTCAACTACAAACAAAAGACGAAAATCTTTTAGAGTTTTGCAAAGATCTGTATGACAATCCGAGAGATGATTTTGATGTGGTTTTCATTACTAAAGAACGACATCAGATTAAAGCCCACCGATTACTGCTAACGATAGCATGCGATTTCTTTCGTGAGCTGTTTGAAACTATTGAGTTTGACGAATTTTGCATAATTCTTAAGGATTACTCATTTAACTCAGTTAACTCCTTGATACGATTTTTCTACACAGGAGAGTTGCATTGCAATCAAGAAGTGTTGCAAGAATTAATTAGTTTGTGCACCGAATTTAATTGCGAACAAATACATGTAATCGACGAATTGATACAGAATCAAAAAATTCCGGCAAGTAGTGTAGAAATCATTTCCTCCTCGGAAGATTACCTTCCTCAGTTGGATTTTTCCTTTAATAACACAACACTTCACATAACTCAAATCCCACAAGATAACACACCGAAAATGGAAACTGATTTCGATGACTACTTTGAAAACGCAGTTCAGAATGTTGAAACGATTTTCTTCAACGAAAATAATGATGGTCAACAGTTGGCAAATAATAGCGCAAGCGAAGTTTTGGACGATTTGAGCAAAGATATTAAGGAAGAATGGTTAGAAGATGACGTCGAGGACATATCAGATATCGATAATATCTCCGATGTTGAAAGAGTGGAACGAATTGCATATAGAAATCGAGATGATCCTGAACAGCCACTTAATCCAGAGTATGATGAGCAGCTTAAGAAGGCATGCGAAGATGTTTTAACAAACGGCACGTCATTCCTGAATGCTAGCAAGAAGTATGGCATAACAAGGTCTGTCGTTCATAGACACGTACAAAAAATACGACAACAATCGAATGAAACCCAGCCAGCATCGTCAAATAAAGTTGAAAATGGTAAAGAGTCTTGGTGGGATTTGGGTAACCCAACGTGGAATACAAGCACACAAGAAAATCTAAAGAAAAAGTCTAAAAACAAAATTCATTATAAATTAGAAGGAGCAAAAAATCCAGAATTCGCTGAAAATTTAAGAAAGGCCTGTCAAGATGTTGTTGTCAATGGAATTAGTTTTTGGACTGCTCACAAAAAATATGGCATTACAAGAAGTGTCATACATAGACACGTGCAAAGGATAAAAGAAAAGCAGCAACAAACGAAAGAACATAAAAAGAAGAAATTACTCTCTCATTCAGCTCCATCAATAACTTTTCCAGCTTTAGCAATGAACATTAATCAATTACGGGAAGAACAGAATCGGTATAAATTGCGTTTGCAGCAGGCTATCAACTCCTGTAAGGATGGAAACTCAACGAAACGAGCTGCAAACATGTTTGGGGTTCCGCAAAATGCAATCGAGCGTAATTTAAGAGGTTTTAAAAATCTTAAAAATCTTTCCTAA
- Protein Sequence
- MSEQTSIFQLQTKDENLLEFCKDLYDNPRDDFDVVFITKERHQIKAHRLLLTIACDFFRELFETIEFDEFCIILKDYSFNSVNSLIRFFYTGELHCNQEVLQELISLCTEFNCEQIHVIDELIQNQKIPASSVEIISSSEDYLPQLDFSFNNTTLHITQIPQDNTPKMETDFDDYFENAVQNVETIFFNENNDGQQLANNSASEVLDDLSKDIKEEWLEDDVEDISDIDNISDVERVERIAYRNRDDPEQPLNPEYDEQLKKACEDVLTNGTSFLNASKKYGITRSVVHRHVQKIRQQSNETQPASSNKVENGKESWWDLGNPTWNTSTQENLKKKSKNKIHYKLEGAKNPEFAENLRKACQDVVVNGISFWTAHKKYGITRSVIHRHVQRIKEKQQQTKEHKKKKLLSHSAPSITFPALAMNINQLREEQNRYKLRLQQAINSCKDGNSTKRAANMFGVPQNAIERNLRGFKNLKNLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01257291;
- 90% Identity
- iTF_01257291;
- 80% Identity
- iTF_01257291;