Paka010020.1
Basic Information
- Insect
- Propsilocerus akamusi
- Gene Symbol
- bab2
- Assembly
- GCA_018397935.1
- Location
- CM031469.1:14516542-14531392[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-12 2.4e-09 36.5 0.0 1 39 623 662 623 666 0.91 2 4 8e-12 1.2e-08 34.3 0.0 2 39 678 715 677 718 0.94 3 4 4.9e-16 7.1e-13 47.8 0.0 3 45 734 777 732 777 0.97 4 4 6.7e-19 9.8e-16 56.9 0.0 1 41 784 825 784 827 0.97
Sequence Information
- Coding Sequence
- ATGTCAAATCTCGAGTCACCAAAAAAACCACAGCATATTCTGTACCCGTCTCAAATACCAAATACCAGCAGCAAATCCTCGCCGCCAAAAGCTCATATGCCAAAAATAACGTCACCAAAGCCTCAATCCAGTCAAACGCAAACATCGCATCAATACTATTCATTAAGATGGAACAATTATCAAAACAATCTCACAGAGATGTTTCATGAACTGCTGAATGCAGAAAAATTCGTAGATGTCACATTAGCTTGCGAGCATAGTTCATTAAAATGCCATAAAGTCGTTCTGTCAGCATGCTCAACATTTTTCCAAAAGCTTTTAATAGAAAATCCCTGCAAGCATCCGATTATTATTATGCCTCCAGAAGTAGCATTTGCTGACCTTCAGTTTATCATCGAATTTGTCTATCGCGGCGAAATAGATGTATCTGAAGCAGAACTACAAAGTTTAATTCGAACCGCCGAGCAGTTGAAAATCAAAGGATTGTGCGAAATTAACGATCATACAACGACAGAATCTGACACAGAAGTCATTTATCCACCGCATAAGAAAATTCGTGCATCGCGACATTACGAGAATAACAATAATATAGGAAATAGCAACAGAAATCATTCACAACTGCGCGAAGAAACATCGTCAGTAGTGGCAACAGCATCATCTGTCAGTCATCAGAAATCTTCGTTATCCGCATCAAATCATGGTCAGTTGTCAGTAGTGGATGAAAACAGTCGAACGAAGCAACATCACCATCATAAATCACAAGTAAAGGATCCAAAAAACTCATCAAATTCACCGAATAACTCAAATAGCAGCAAAAATATGGCGAGTCTAGAAATGGGAATGAATGGCAACGTTGTAATGGGCGTACCATTAACTTATATGGATTTTGCTCCCGAACCACCCGCACCAACAGCTACACCAGTTATCACGACAGATGTCAATTGCACTCCCAGCCATGACACGAAAGATCTGTCGAACACGACATCTGCAAATGGTACAATTGAAGCCATCGAAGTACCGCGCATCAAATTCGAAACCTTGCGATCACTTGATCCGACTGAAACCATTGAATATGTGGATAATTCAATTCAACATTCCATTTGCCGTTTAGATCAACATCCTGTGACGGTTACATCAAATAGTCCCCTCATACATCATTCACATCATTCGTCACCGACGACTGTTCAAATAATCACCACATGCCCGTCTCCTGTAACGTCACTGAGTGATTTGGGCATCAAAACGACTTCAATAATTACGACAGCGCCAATGAACCATCATCTTCATCATCAGCAGCAACAACAACAACAACAACAACAGCAGCAGCAACAACAACATCATCATCACGATGAACAAAATCACCAGACAGTGGAACATCATCAACAACAGCAACATCATCATCAACAGATTCCCGAGCACCATCAAATTCACATGCACAGTATCCATCAGCCACAACAAATAACAATCCAAGAGCAACGTCCACTAATCCAACATCATCAGATTATTCAAACTATAAAGACTGAAGAGCTCGACATTAAACCGTCGATTCATGAACTGATGGCCGTTAGTAATATGGAAGTTGATCAGCAACAACAGCACCAACAACAGCAATCTCAGCAGCAACAACAGGGCAATGGGAATGAAAATGTTCATGGAATTGTGGTGACGCCCGAGGTTCAAACAATCATGACGACACCAACACAAATTGAAATGTACAGTTCCGATACGAGCGAAGATGCAAAAATGCAGAATGATTCGAATGGCGGCCAAATGCAATACATCACATTGGGCGGTAACAACAACAACAATGGAACGCCAACAAATGACTCGAAAGCAAATGGAAATGGCGGTGGACCAAAAACATGGACACCAAACGATATGGAAGCTGCACTGGAGGCCCTGAGATCACATAATATGAGCTTAACAAAGGCATCGGCAACATATGGAATTCCTTCCACCACATTATGGCAGCGAGCTCATCGTCTGGGAATCGATACGCCTAAAAAAGAAGGTCCCACCAAGACGTGGAACGAAGATTCACTGAATAGCGCTCTGGATGCTCTACGCACGGGAACAATTTCAGCAAATAAAGCATCAAAAGCCTTTGGCATTCCGTCTTCCACACTCTACAAAATTGCACGTCGCGAGGGAATTCGATTGGCGGCGCCTTTTAATGCCGCACCAACAACGTGGTCTGCTGAGGATTTGGAAAAAGCTCTTGAAGCAATTCGCGCTGGTGCTGCATCCGTTCAAAAGGCAAGCACTGAATTTGGAATTCCAACAGGAACATTATATGGACGTTGCAAGAGAGAAGGCATCGAATTATCGCGTTCGAATCCAACGCCATGGTCTGAGGATGCAATGATGGAGGCTTTGGAAGCCGTTCGTGTTGGACAAATGTCAATAAATCAAGCAGCTATTCACTTTAATTTGCCGTATAGTTCTCTTTATGGGCGCTTTAAGCGCGGCAAATATGGCGATCCGCCGAATGGCAACACAAATAATGATTCATCATCACACATCACGGCCGATCATAACAGTCCTGATAATTCGGTGAGTAATTATTCACATCATACGCTAATCGCCGATTCGAATGCGACAACGCAGTTGCAAGAGAACATCATCTATCAGCAACATTATTCGCCATCTCAACAAATCATTCATCAACAACCGCCCCAGCAAATCTATCATCATCAGCAAATTATTTATCAGAATCATCCAACGCAGCCGCAAATCTTACAAATTCATCAAATCAAAAAAGAAACTAGTTGA
- Protein Sequence
- MSNLESPKKPQHILYPSQIPNTSSKSSPPKAHMPKITSPKPQSSQTQTSHQYYSLRWNNYQNNLTEMFHELLNAEKFVDVTLACEHSSLKCHKVVLSACSTFFQKLLIENPCKHPIIIMPPEVAFADLQFIIEFVYRGEIDVSEAELQSLIRTAEQLKIKGLCEINDHTTTESDTEVIYPPHKKIRASRHYENNNNIGNSNRNHSQLREETSSVVATASSVSHQKSSLSASNHGQLSVVDENSRTKQHHHHKSQVKDPKNSSNSPNNSNSSKNMASLEMGMNGNVVMGVPLTYMDFAPEPPAPTATPVITTDVNCTPSHDTKDLSNTTSANGTIEAIEVPRIKFETLRSLDPTETIEYVDNSIQHSICRLDQHPVTVTSNSPLIHHSHHSSPTTVQIITTCPSPVTSLSDLGIKTTSIITTAPMNHHLHHQQQQQQQQQQQQQQQHHHHDEQNHQTVEHHQQQQHHHQQIPEHHQIHMHSIHQPQQITIQEQRPLIQHHQIIQTIKTEELDIKPSIHELMAVSNMEVDQQQQHQQQQSQQQQQGNGNENVHGIVVTPEVQTIMTTPTQIEMYSSDTSEDAKMQNDSNGGQMQYITLGGNNNNNGTPTNDSKANGNGGGPKTWTPNDMEAALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNSALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLEKALEAIRAGAASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRGKYGDPPNGNTNNDSSSHITADHNSPDNSVSNYSHHTLIADSNATTQLQENIIYQQHYSPSQQIIHQQPPQQIYHHQQIIYQNHPTQPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01257235;
- 90% Identity
- iTF_01257235;
- 80% Identity
- iTF_01257235;