Pcoq011756.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- -
- Assembly
- GCA_001932985.1
- Location
- MNCL01000034.1:530524-538144[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.44 54 5.1 2.5 1 23 893 916 893 916 0.94 2 13 1.7 2.1e+02 3.2 2.4 1 23 1010 1032 1010 1032 0.94 3 13 0.0014 0.18 12.9 2.6 2 23 1035 1056 1035 1056 0.97 4 13 2.2e-05 0.0028 18.6 0.2 1 23 1062 1084 1062 1084 0.97 5 13 0.00013 0.016 16.1 8.4 2 23 1091 1113 1090 1113 0.96 6 13 2.9 3.6e+02 2.5 0.4 5 23 1126 1144 1123 1144 0.95 7 13 0.0072 0.9 10.7 4.2 3 23 1151 1172 1149 1172 0.95 8 13 0.0035 0.43 11.7 0.1 2 23 1183 1203 1183 1203 0.97 9 13 4.2e-05 0.0052 17.7 0.8 1 19 1209 1227 1209 1231 0.95 10 13 0.00018 0.022 15.7 0.3 1 23 1239 1261 1239 1261 0.98 11 13 0.00021 0.026 15.5 7.2 1 23 1267 1289 1267 1290 0.96 12 13 0.0006 0.075 14.1 5.9 1 23 1295 1317 1295 1317 0.99 13 13 0.0075 0.93 10.6 5.6 1 23 1323 1345 1323 1346 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAACAAATTCCCTGCCCGGTGTGCACACTCTTCCTGCACCCGGGAATGGACTTGGCGGATCATTTAGAGACTCATCCAAAAGAACAAGTCATAAAAGCTCTGGTTTCCCTTGCATCAGGAAGGCAGCCAATCAAACCCCCGGCAATTCAAAACCCAATCCAGGCGACGCAAGTACCACAGCGAAGCAATATACCACCTCTACAAGGCTCTACCGATGCAGGCCTATTGACCTCCAATGAATCCAGAATCCTAGCCCCAAGTCAGCATAATGTGATGATCGTGAACAGTCAGAGCACAATGGTTTATCAGAGCAGCGACCCTGGTCACCACCGGATGATACCGCAAGTCATCCAGCTTACTCCACCTCCGTTACGACTTTTCAGTTCACCAAGACAAAGCCAAGCGAAATTTCTTCCACCGCCTCCGACTTATGGGGCCGCAATTAATCAGATTAGATCTCAAAATTCCCAGAATATATGTAGCCGATTTAGTCAGTTATCAACTAATGAAAATCCAAACTATTACACGCCCAGTCATACTAGTTTCGAATCGACGTTCAACAACAATAGCAATCCTAGTCTACGCCTCCCGATGGCTCCTCGAAACATGTCGCCAAGACCAAGTCCATCACCATCGGTACTTCGTTTCGCAGAGAGCCCGGTTACTGCACATTATGTGGAACGGGAGAATGGTGACTTTATAGTTCAAGAAAGTCCACGGCACGTTGTTGAATGTGTTGAAAAAGACGATGGCGAATTTTCTGTTATAGAAAAGGTAATCAGGTCACCACCTAGTCTTGTCCACTTTGAAGAGTCAGATCATAACAACGAATCAGATTTGGAGAGGAATGATAATGCTACACCAGTCATTAGTGAAGCTGCTGCAGACCCAGAAAGTGATAAAGTTACTGATGAGAAAGAAGAGGCTCCCAGTAATGTAAAAGTTATAAGCAATGTAAAACTCGCCCCAAAAGAAGCTCTTGGGGTAATGGAAAACATCATGGCATCTACTCCTGGTGTAGAGCTGCTTTGGACGGGCTTGGTTGAATCAGTATCAGACGACattaaggaggaaaaaaagCATTCGACGGTATCAGATTCTGTGGCATCCAACAGTAGTCAAGTAAGCGAAGCTGAAAGCCTGGCTGACGAGGATAATATTGGTAGACCTCAATCATCTTCTTCAGCTGCAACAAGTGTTATTCGAATGGCCTCTGTACAGAAGAGTCCAAGTCCCGAACCAGTTGCCCCAAAGCCAATCGAAGTTGAAAAGGTGGCAAAAACTAACTATCCGCGGGAAATGGTGAAACGCCCTTTCAAGAAAACACCGAAGAAACTTGtagttaaattcaaaaatccacCACAGCCACAGGTAGATAATTTCGATGCTCAGAATATCGCAGATGATAGTCTGCAGTCGGGCACTTCACAATCTCAgggaaataattctttaagcACAGTAACCCCTGGTTGTCCAGGAGAAGCAGAACGAGAGAAAATCGGCGAGGCTGTAGAGGATAAGACTGAACAAGACAAGAACGCGTTGCTAGAAATTGAAGAATCTGAAATTGAAGAGGAACCAAATCTGATCCTTGCAGAAATTGAAGTTCAAATGCCTCTTGAGAATAGCGGTCAGGAAGATGGTATGTCTATCAAAACTAAGGGCGGAAGCAGCTCTGAACCAGTTAGAACCGAACCGAAAATATTAGATTCGGAAACATTACAAAAGCTGGCTGAGAAGGCAGATGAAGTGGCTCTGGACGCTTTAAATATGCCTTTGGTGATAGTTCATGAACCATCGACACTAGACGAGTTCCCTGTACAGAGTGCAGAGGAGGGAGAAACGAGGCCCTTTCAGAAGCTTTCTGATTCATCtagtaatataaatgaaaacaattttacgagGGCATTGGATGCATGCATTACAAACAATCAGGAAGATTCCTATTCGGTTCATTTATCTACCGTAGGGTCGGTTGGCGACGGTCCTGTAAATAGTGGGAGTCAAGACCCAACACGAAGTGAATCGGTGACGTTAAACTCTTTTCCTTCGACATCTTTCTCGAAACCTTCAGCTAGTTCCTTTTCTGCTTTGCGTGAACAGACTGATTTCCAGAACTCTCATAGCTATAATGACTATCCGTTTAGCTTTTTGTACACAAATAATATGGAAAAGAGCTGTTTGTCTCCCATCTACCCTTCTGAAGATCAATCGTGGCAGAGATTTAGTGGACCAACGTTTCAACAAAATGCTCCGATGCAAATTCCAGACTTGGATTCCGAACGAAGTAGCTACATAGATTTAGATGCgtgtaagaaaaattctagTACTGATACAGTTCCTTCCGTCGACGCTTTGAACATTCGGACCGATGAAAAAATGCCAGCGAAGGGTGAAATATCAGAGCAAGAAAGTAATGGCGAGATCGACCTTTCGTGGAGCCAAGCGttataTCATGAGACCCAGCGGCAGAACAATCAATTAGAAAACTATGGAACAAGGGAGAGCGGCAGTTTTAGCAACGAAGAATTCTTTTTCAGCCCACAAAACTTATCCACCGATACAAAACCGTCGATTAAATCTTCCGATACAACGCAAGAGGACAAGCCGGAACTTCTTTTAGCAAAGGGTAAGGAGAAGAAGAGTTCCATAGTGAAGAAACGGAAAACCTTTCAGTGTGACCACTGCTTATCAGTATTTTCTAAGTTGAAAGATCGCAATTCTCACTTGCTCGAAAAACATAGTTATAAGCGTGTTAATCGTCGCTTGATACGTGAACTACCTCCGGCTACCGTGACCACTGAAACAGAAGCACAAAATCCTGCTGAAACTGATGATGGTGCCGATGTTAAAAAGCCTGAATTGACTGCTATTGCATCGATAGAGTCTTCCCATCTTCCTAGAACTAAATATGACGCTATCCGTGCTGGAGTGTATCGAATGCTAATGAATTTTAACCTAAGTGTTCTACAGCAAAACCAGAACGTGGATGTAGACAAGGCTTTGTTCGATTCAAAATCGTTCTGCTGTTACACCTGTAAAAGGGATTTTATCAGTGTGAAATCTTTCGATGAGCATCTAGCGGAACACCCAGCGGAGTGCTTTACTTGTAGTAAGAAGTTTACCCGATGGATGTACTTCTCCATTCATTTGAAGAGACATTTGGGCTGGAAGGACTTTGCTTGCACGGTATGTAGCAAAAAATTCGTTATTCGAAGTGCCCTGATAGAGCACATGCGCATGCACACCGGGGTTACACCCTTGAAGTGTAAATTTTGCGATAAACACTTCAAAAGGTACTCGAACTTAACACAACACAAAAGAGTGTGCCATCAAACCAAAAGTTCGAAGAAGAAGGATTACGTGTGCCATTGCGGAGAAGTTTTGCCTTCGAAAGCTCGTTTCCTGTGGCATAAGGAGACCCACGATACAAAGCCGAAGTGCTGTCCTTATTGCAGGGACAGGTTTATACATTCGAACAGTTTACGGCGGCATATTCGACTAGCGCATTCGGACAAATTCTCGTACACCGAACCGGCGGAATGCCCCGTATGTAACCAGGTGTACGCAAAAACTAGTCTTAAGGCGCATATGAGCACGCACTCGATGGACACCCAGCACGAATGCGTGATCTGCAACAAGTCATTTAGTACCAaatggaatttgaaaatccacaGCTGGGTGCATGCCAGTCGAACGGCTAAACCATTTAAATGTGATCTGTGTGTGAAGGCCTTTGTACGAGAGATTGATTATAAGAACCACATGAACGCCCATAAGCAAATCAAGCCGTACACTTGTGAATATTGCGGCTGCAAGTTCATAAGGAAGTACAATTATATGCGTCACAGCCGGGAGCATCATGGCCAAAAGAAGTTCCGCTGTGACCTGTGCGGCAAACTATTCCATAGACACTACTATTTGATAGAGCACAGACGAACCCACACTGGCGAACGGCCATTTTTGTGCACGATTTGCGGTAAGAGTTCAACGACGAAAACTAATcacaataaacatttaaagattCACCATTCACGTGATCCCTTTACAACGGAAACATAA
- Protein Sequence
- MGEQIPCPVCTLFLHPGMDLADHLETHPKEQVIKALVSLASGRQPIKPPAIQNPIQATQVPQRSNIPPLQGSTDAGLLTSNESRILAPSQHNVMIVNSQSTMVYQSSDPGHHRMIPQVIQLTPPPLRLFSSPRQSQAKFLPPPPTYGAAINQIRSQNSQNICSRFSQLSTNENPNYYTPSHTSFESTFNNNSNPSLRLPMAPRNMSPRPSPSPSVLRFAESPVTAHYVERENGDFIVQESPRHVVECVEKDDGEFSVIEKVIRSPPSLVHFEESDHNNESDLERNDNATPVISEAAADPESDKVTDEKEEAPSNVKVISNVKLAPKEALGVMENIMASTPGVELLWTGLVESVSDDIKEEKKHSTVSDSVASNSSQVSEAESLADEDNIGRPQSSSSAATSVIRMASVQKSPSPEPVAPKPIEVEKVAKTNYPREMVKRPFKKTPKKLVVKFKNPPQPQVDNFDAQNIADDSLQSGTSQSQGNNSLSTVTPGCPGEAEREKIGEAVEDKTEQDKNALLEIEESEIEEEPNLILAEIEVQMPLENSGQEDGMSIKTKGGSSSEPVRTEPKILDSETLQKLAEKADEVALDALNMPLVIVHEPSTLDEFPVQSAEEGETRPFQKLSDSSSNINENNFTRALDACITNNQEDSYSVHLSTVGSVGDGPVNSGSQDPTRSESVTLNSFPSTSFSKPSASSFSALREQTDFQNSHSYNDYPFSFLYTNNMEKSCLSPIYPSEDQSWQRFSGPTFQQNAPMQIPDLDSERSSYIDLDACKKNSSTDTVPSVDALNIRTDEKMPAKGEISEQESNGEIDLSWSQALYHETQRQNNQLENYGTRESGSFSNEEFFFSPQNLSTDTKPSIKSSDTTQEDKPELLLAKGKEKKSSIVKKRKTFQCDHCLSVFSKLKDRNSHLLEKHSYKRVNRRLIRELPPATVTTETEAQNPAETDDGADVKKPELTAIASIESSHLPRTKYDAIRAGVYRMLMNFNLSVLQQNQNVDVDKALFDSKSFCCYTCKRDFISVKSFDEHLAEHPAECFTCSKKFTRWMYFSIHLKRHLGWKDFACTVCSKKFVIRSALIEHMRMHTGVTPLKCKFCDKHFKRYSNLTQHKRVCHQTKSSKKKDYVCHCGEVLPSKARFLWHKETHDTKPKCCPYCRDRFIHSNSLRRHIRLAHSDKFSYTEPAECPVCNQVYAKTSLKAHMSTHSMDTQHECVICNKSFSTKWNLKIHSWVHASRTAKPFKCDLCVKAFVREIDYKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHSREHHGQKKFRCDLCGKLFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTTET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628636;
- 90% Identity
- -
- 80% Identity
- -