Pcoq019531.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- -
- Assembly
- GCA_001932985.1
- Location
- MNCL01000035.1:839409-844481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.047 5.8 8.1 0.7 2 23 208 230 207 230 0.93 2 19 0.02 2.4 9.3 2.5 2 19 273 290 272 293 0.92 3 19 0.26 33 5.8 2.5 2 23 304 325 303 325 0.95 4 19 0.0097 1.2 10.3 0.1 3 23 334 355 333 355 0.95 5 19 0.00076 0.094 13.8 0.6 3 23 363 383 361 383 0.88 6 19 0.0045 0.56 11.3 1.4 1 23 389 412 389 412 0.96 7 19 6.2e-05 0.0077 17.2 2.4 1 23 417 439 417 439 0.98 8 19 0.14 18 6.6 0.1 2 23 449 470 448 470 0.95 9 19 0.0002 0.025 15.6 0.6 1 23 487 509 487 509 0.96 10 19 0.0032 0.39 11.8 2.1 1 23 514 536 514 536 0.97 11 19 0.85 1.1e+02 4.2 1.9 1 23 552 577 552 577 0.93 12 19 7.6e-05 0.0094 16.9 0.3 1 23 583 606 583 606 0.95 13 19 0.0011 0.13 13.3 0.4 1 23 611 634 611 634 0.97 14 19 0.0019 0.23 12.5 1.1 1 23 639 662 639 662 0.94 15 19 2.2e-05 0.0028 18.6 1.4 1 23 665 688 665 688 0.98 16 19 0.79 98 4.3 4.0 1 23 694 717 694 717 0.93 17 19 0.01 1.3 10.2 0.7 1 23 723 745 723 745 0.98 18 19 4.9e-07 6e-05 23.8 1.9 1 23 751 773 751 773 0.98 19 19 0.019 2.4 9.3 0.1 1 23 779 804 779 804 0.95
Sequence Information
- Coding Sequence
- ATGCCTCCGCCGAGAAAGCGGGGCCGGCCACCAAAGGCGAAGCCGGCCAATTGTCTGAATTGTTCCGTAACGCTGCAGCAGCCTTGCCAGCTAATTTTCGACGAAAGTGGCGTCGAGCTGGAACTGCAGAAACTGCTGTCGGTTTGCTTTAACCTGCACGTTGTGCGGGACAGAACCCAAGTACAGGCCCTCTGCGAGGACTGCCTCAATAAACTGATTGATATTTACGATGTTATGCAAAGGCAGCATCAGGACGAGCCTGGACCATCTAGATCTTCACCGGAACCGTTTGAAAGTAAAGAGGAAATGGCAGAAGAAACTGATGAGGAGTTTGAAGAGGAGGTCTATGATATCGTTGAAGTGGAACCAGAAACGGAAACGAGCAATGATAAAGATTTAGACATAGAAGAGCTAAGTGAACATAAGGACGTTCATATAGAAGTCAGTAATCAAGGATCGAGCCAGTCTGGGAATGAAGACTGCAATGAAGCATCGGCAAGTCATCGAgactttgaaaatgttgactatttaGAGGACTTTGATCAGGATATTgatattaaagaatataaaatcgCCGTCTTGGAAAATACACTATCGCATATTCTGCTTCCTGAAAGTATTCAGTGTCGGATATGTTCAGAAAGTTTTGAGAAACATGCTGAAATGATAAGCCATACAGAAAATCAGCATTGCGTGGAAGACTTCGCCTATCCTTGTATTATTGATGAAAATTGTGAACCCCAAAAATCGGTTATGGATTTGTCGCTCCACTTGGTTTTCAAACACTACGATTTGGATAGACTAGCGATTTATACCCAATGTCCTGAATGTAATAAGAGGTTTAACAATTTCTTGGCTTACAACAAACATTCATGTTACATTGGTAAAAAGATACCACGAAGCGCAACTGAGTGCGAGTCTTGtggtaaattattcaaatcaaataaaagataTCGTTTTCACCAAAACTCCCACCAAGAAAGGAGACGGCCGAAGGCATGCTTCATCTGTGATACGCTATTTCGAGATGAAGATGAGTTTTTCGAGCATATCATGTATGAGCATGAAAAAAGCCTCGGTTTCATTTGTATAAGCTGTGATAAGACCTTTACTTCTGAGCAGAATTTAAAGAACCATGAAAGTATACACAAAGTAAAGCGCCAGTATAATTGCAAACTGTGCAATAAATCGTATCTTTACAATCAACTTTTGAAGGATCATATGATATCGACACATGGGAAGAATCCTTTTAGGTGTCATATTTGTGGCAAGTATCTCATTAAGAAAACGCTCCTAAATAAACACATCTTATCACACAATAAACCTCAAGCCGCCGAGGTTACGTCGTGTGGGGTGTGCGGTTTAATCTTTGAAAAATCAGAAGAAAGTGAAGACCATATGAACGAACATGATGAAGGCGATGAGCCGAGCGTAGTAAACGAAGTGATAGACATAGCGTACTGTTGCGAATATTGCGAACTTGCCTTCAACTCGATCAGTAACTTGATTGCTCATCGGGAACTGCAcgataaaaagcaatttttttgcgACATGTGTCCTTTGAGCTACGACCAATACAAGAAGTTGAAAACGCATAAATTGACCCATATTAACTATGTGGACAAGCGAAACACCTTTCCTGTTATTAGGCACTACGTTTGCGATTATCCAaaTTGTATAATGAGTTATCAGCAGTGGACAAGTCTAAGGTCACATAAAAGGCACAAACATACTGATCAGAAAGGATTTGAATGTCCAAAATGCTCCGAAGGATTTTCAGATGTgcaacaattcaaaaaacacATGGAGGAGGTCCATAAAAGAACTGCATTTAAATGCCAATTTTGTAACAAAGATTATGGCACTAAAATGGCACTAGCAGTTCACATCGCAAGGAGACATAACGCAAGTCGTTTTCACTGCGATGAATGTGAACAAAGCTACGCTACAAAAGCTCTTTTGGATAGACATAAGACCAGCATACACAGCAACTACACATGTGAGATTTGcggtaaaatattgaaaaatttgaaaaattatcatgTTCACCAGAGAATGGTGCACGAAAAAGAGAAGAGGTTTTTTTGCAAGTACTGTCAAAAgggatattttaataattgcgaCAAAATAGATCATGAAAAATCGgtacacgaaaaaataaagaaatacaaatgCGATCTGTGCCCATATTCGGCGGTGTACAAAGAATGTCTAGTTGTGCACAAGAGGGCACATCTTAATGAAACCCCTTTCGAGTGCAAACTTTGTAATAAGGGATTTCGTCGGAGCTACGCTTTGCAGCTCCATATGAAGCGTCACTACGATATTAGAGAATTTGTATGCTTCTATGAAGGGTGTGGAGCGTCCTATCCAAAccaaggaattttaaattcccatATTAAGACCAAACATGCGGATGGTGCGTGCAAAGAGTCAAAAGCAAAGCGAAAACGGTTAACTGCTGATGGCTCTCAGAAGCCACGGGCCACTAGACCAACTGCTGAGTTCTTTGTTGATGACGACGATGGACTGGATGATGGAGTTATAGGGGAGCATAGCAATCAAGGAATGAAGGATGTTGAAATCGTAGTTGGTGACAATATATACCTTGTTAAGGAGGAACCGAATTCAACGTCCCTTGGACAAAGTAATGAATCAGATCATGACTATATTGTACGTGTTGAAGGTGCTAAAGCTTATGGCAATGAAATCGAAGAAGTTTTCGAAGTTGTTATGCAAGATATATAA
- Protein Sequence
- MPPPRKRGRPPKAKPANCLNCSVTLQQPCQLIFDESGVELELQKLLSVCFNLHVVRDRTQVQALCEDCLNKLIDIYDVMQRQHQDEPGPSRSSPEPFESKEEMAEETDEEFEEEVYDIVEVEPETETSNDKDLDIEELSEHKDVHIEVSNQGSSQSGNEDCNEASASHRDFENVDYLEDFDQDIDIKEYKIAVLENTLSHILLPESIQCRICSESFEKHAEMISHTENQHCVEDFAYPCIIDENCEPQKSVMDLSLHLVFKHYDLDRLAIYTQCPECNKRFNNFLAYNKHSCYIGKKIPRSATECESCGKLFKSNKRYRFHQNSHQERRRPKACFICDTLFRDEDEFFEHIMYEHEKSLGFICISCDKTFTSEQNLKNHESIHKVKRQYNCKLCNKSYLYNQLLKDHMISTHGKNPFRCHICGKYLIKKTLLNKHILSHNKPQAAEVTSCGVCGLIFEKSEESEDHMNEHDEGDEPSVVNEVIDIAYCCEYCELAFNSISNLIAHRELHDKKQFFCDMCPLSYDQYKKLKTHKLTHINYVDKRNTFPVIRHYVCDYPNCIMSYQQWTSLRSHKRHKHTDQKGFECPKCSEGFSDVQQFKKHMEEVHKRTAFKCQFCNKDYGTKMALAVHIARRHNASRFHCDECEQSYATKALLDRHKTSIHSNYTCEICGKILKNLKNYHVHQRMVHEKEKRFFCKYCQKGYFNNCDKIDHEKSVHEKIKKYKCDLCPYSAVYKECLVVHKRAHLNETPFECKLCNKGFRRSYALQLHMKRHYDIREFVCFYEGCGASYPNQGILNSHIKTKHADGACKESKAKRKRLTADGSQKPRATRPTAEFFVDDDDGLDDGVIGEHSNQGMKDVEIVVGDNIYLVKEEPNSTSLGQSNESDHDYIVRVEGAKAYGNEIEEVFEVVMQDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -