Pcoq001769.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- -
- Assembly
- GCA_001932985.1
- Location
- MNCL01000138.1:369313-377219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00015 0.019 16.0 1.7 1 23 553 575 553 575 0.98 2 13 1.3 1.6e+02 3.6 0.0 2 23 581 601 580 601 0.91 3 13 0.0013 0.17 13.0 0.1 2 23 608 629 607 629 0.96 4 13 2.7e-05 0.0034 18.3 3.7 1 23 653 675 653 675 0.98 5 13 0.00047 0.058 14.4 0.4 3 23 682 701 680 701 0.97 6 13 0.0023 0.29 12.2 0.0 2 23 708 729 707 729 0.96 7 13 3.4 4.2e+02 2.3 2.8 2 23 742 764 741 764 0.93 8 13 8.6e-05 0.011 16.7 0.5 1 23 772 795 772 795 0.95 9 13 0.00011 0.013 16.4 0.6 1 23 805 827 805 827 0.95 10 13 6.1e-07 7.6e-05 23.5 2.2 1 23 833 855 833 855 0.97 11 13 2.5e-05 0.0032 18.4 6.1 1 23 861 883 861 883 0.99 12 13 9.2e-09 1.1e-06 29.2 1.5 1 23 889 911 889 911 0.99 13 13 2.4e-05 0.003 18.5 0.1 1 23 916 939 916 939 0.97
Sequence Information
- Coding Sequence
- atgaagtgcTCCGTGGACGGATGCAAGAATACCACCACCCGCCAGCGCGGGAAATCATATTTTCGATTTCCAAAGGAAACTAAGCTGAAGAAGAAATGGCTAAATGCGATCGGAAGGCCGCATTTCATACCAAAGATTGCAGATGTTGTTTGCGAAGATCATTTTCTTCACAGGGATTTAGAAAGTTCCCAACGGAAAAAGAAGTTGAAACCAAATACTGTACCGTgtaccaaaataaataagGATTCAGaaacaactaaaaatgaaGACATAGAAGAATTAATGAATTCCCTTGAGGACGAAAATACATCAGAAAACAACTCGGTACCATTTTTCGTCATTGAAACTGAAAGTCGGGGTAAGCTGGGGgtGCAAGCCAACAATTCTAGGCATGGAGTTATAGAAGAATCCAAAAACATTACAGCAAACGCATTAGGTTCTGATGAAAATCAATGTGAGATATTAAGTGATTCTGATGAAGAGCAACTTGAAGATCTTAAAATGAGTGTTGAAAATGAGACAATCACCTCTGTCGAAATTGTGCCATTAAGTTACGATATAGAATTATCTGATCACGGGATAAGCAACGAAATGCCCAACGTCGCGCACTTTGACACACAGGATGATATTGGCTCAGTTttatacaTTGAGAGTGATGATTCAgatcataaaattgttactttgCAACCTTCCTCTCAAAAGgTACATGTAgaggaagaaaagaaagatgAAGTTAAAATCACATCTCCTAGAGTGgctCATACATCGGAAAGTTGCAGAGTTTGTTTGGCGAACTATTTTAAGGGCCAGTCCCTATTTACGatctataaaaacaaatacttacCGAATATCATCCACCACATAACAGGGATTGTTataacAAGGACCGATAAACTTCCGTCAAAGGTTTGCTTCAATTGCGCTGATCTGCTAATTAAAGCAGAAAGTATAAGGAGAACATGTTTGTCTTCTGAtagatttttgagaaaaaaacacgcagaattaaaagaaataaaggatGAAGAAGACATCAATACAATACCTATAGACATAACAAAGGAGGAGGAGGTGTTGGAAGATGATAATATAGAGCTAAAAAGTGTGGATAAAGATAAGgatgaagttaaaaataaaattgataacttAACTGGAGACGTATTGCAATTATCATCATCAGCCTGCATTAGTAATGAAGGTTTTTCCAAGTCATTTGATCGATTTTTAGAATTGGATAGAACAAGACAGAGtgcagaaaacaaaacaaaaacaaatgagaATATAGACACAAAGTATATATCATGCAAAAGTAAAAACGATGAAATCcacattgaaaatgaaaaactgctGGAAACCTCATCAACAATCCGTAAGGGAAGTGAGACTTTCTCCTCGTCCTTCAATAGATTTTTGGGTTTAGAGTCGGTAGATACAAACACAGAGGAATGCAACGAAAGCGAAGATATGAAAAAGGAAGATAATTGGCAGGATAGTGCTATAGAATTCGTTGATATGGAAACCTATGATGACATGAGTGAGGATATGCTCGAGTCTTCATCGACAGAAGACATGGATAGTATCAGCGaaaatgaaactgaaaatttaaatgaaaataaaaaaactagaacCAGAAGAGAGAAATCAGATCTTCCTGAGTTGTTTGTATGCGTCATATGCtcgaaaaaattcccaaaGAGAGTATCATTCAATTCACACCAGCGATACCATCGCAGTAAGAATGTTAGATGTCCTGTTTGTCCAGAAGAACTCTCGCCAAAATCTGTAAAAGAACACCTTTTGCAACATAAGAGCAATAACGAGCTGATTTGCGACGAGTGTAGCGAAGAATTTAACGATATTGTTAACTTTTATGAACATTTGAGGACGCATTGCAAAGTCATGCCtagttatgaaattaaatcgattACCAATGAAGATGAAGATAACTTGTTTGCATTCTTTTCATGTCATTTGTGCCCAAAGAAATTCTCAGAAAGAGCAGCATTTAAGCGACATTTAAGATATCACAGAATAGAAAAAGTGAATTGCCCCGTTTGCTCAAAGGAATATAAGCCCAAGCAATTGAAAATGCACATCCGGACACATCCTATAAAGCAAGAGTCAGTTTGTGAGCAGTGTGGCGCTGTTTTTGAAGACCTGCTGGGTCTTGTCAATCATATGAAGGAACACAGACCAGCGCAAATGAGAACAGGAAAATTTGTGCTAAGTTGTGAGATATGCGAACACAAGACCACCTCTTTAGCAACCCATCTGAAGCACATGAAGAATGTTCACAATTTGGAGGACACTAGACCTTTCAAATGTCCCGAGTGCGGTTTAGCATGTACTACAAAGGACGGTGTGCTGAAGCATATGGATAATATGCACAATCCAAATCGTAAAAAGGAAAGGAATTTCCTGTGCAATACTTGCGCTAAGGCCTTTTATACAAAAGCCCAACTGGACTCGCATATACGTTCGCATACTGGTGAACGTCCTTTTAAGTGCAAATATTGTGGTAAGGCGTTTAGCCAGCACTCGTCTTTGGCTATGCACATATTTATTCATACTGGCGAGAAGCGATTTAAATGTACAATATGCGGAAAGGGATTTAGGCAACATTCCCATCTCGACTACCATAAGCAAACGCACTCTGATCAGTATCCTTACACCTGCAACAAATGCGACCGCTCCTTCAAGACCAATGGGAACTTGCGGGCGCATATGAAGATCCATGAAAAGAGACCATTTCCTTGCGAATTATGTGGCAGGGGATTTGTTATACGGTCTAAATTGATGGCACATATACGAAAAGCGCATAATGATAAGGAAGAGGAATGCTtgctgaaaattaaagaatcaaattag
- Protein Sequence
- MKCSVDGCKNTTTRQRGKSYFRFPKETKLKKKWLNAIGRPHFIPKIADVVCEDHFLHRDLESSQRKKKLKPNTVPCTKINKDSETTKNEDIEELMNSLEDENTSENNSVPFFVIETESRGKLGVQANNSRHGVIEESKNITANALGSDENQCEILSDSDEEQLEDLKMSVENETITSVEIVPLSYDIELSDHGISNEMPNVAHFDTQDDIGSVLYIESDDSDHKIVTLQPSSQKVHVEEEKKDEVKITSPRVAHTSESCRVCLANYFKGQSLFTIYKNKYLPNIIHHITGIVITRTDKLPSKVCFNCADLLIKAESIRRTCLSSDRFLRKKHAELKEIKDEEDINTIPIDITKEEEVLEDDNIELKSVDKDKDEVKNKIDNLTGDVLQLSSSACISNEGFSKSFDRFLELDRTRQSAENKTKTNENIDTKYISCKSKNDEIHIENEKLLETSSTIRKGSETFSSSFNRFLGLESVDTNTEECNESEDMKKEDNWQDSAIEFVDMETYDDMSEDMLESSSTEDMDSISENETENLNENKKTRTRREKSDLPELFVCVICSKKFPKRVSFNSHQRYHRSKNVRCPVCPEELSPKSVKEHLLQHKSNNELICDECSEEFNDIVNFYEHLRTHCKVMPSYEIKSITNEDEDNLFAFFSCHLCPKKFSERAAFKRHLRYHRIEKVNCPVCSKEYKPKQLKMHIRTHPIKQESVCEQCGAVFEDLLGLVNHMKEHRPAQMRTGKFVLSCEICEHKTTSLATHLKHMKNVHNLEDTRPFKCPECGLACTTKDGVLKHMDNMHNPNRKKERNFLCNTCAKAFYTKAQLDSHIRSHTGERPFKCKYCGKAFSQHSSLAMHIFIHTGEKRFKCTICGKGFRQHSHLDYHKQTHSDQYPYTCNKCDRSFKTNGNLRAHMKIHEKRPFPCELCGRGFVIRSKLMAHIRKAHNDKEEECLLKIKESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01256449;
- 90% Identity
- iTF_01256449;
- 80% Identity
- iTF_01256449;