Pcoq019517.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- -
- Assembly
- GCA_001932985.1
- Location
- MNCL01000035.1:846267-850296[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5 6.2e+02 1.7 1.7 2 23 244 266 243 266 0.92 2 19 0.0053 0.66 11.1 2.7 2 19 309 326 308 329 0.93 3 19 0.0092 1.1 10.3 0.8 3 23 342 362 341 362 0.91 4 19 0.0059 0.73 11.0 0.2 3 23 371 392 370 392 0.94 5 19 0.011 1.3 10.1 1.2 5 23 402 420 398 420 0.92 6 19 0.00021 0.026 15.5 1.3 1 23 426 449 426 449 0.96 7 19 0.00026 0.032 15.2 2.5 1 23 455 477 455 477 0.99 8 19 2.7 3.4e+02 2.6 0.0 3 23 488 508 486 508 0.90 9 19 0.00047 0.058 14.4 0.1 1 23 524 546 524 546 0.96 10 19 0.0014 0.18 12.9 2.6 1 23 551 573 551 573 0.95 11 19 0.058 7.2 7.8 0.1 2 23 590 613 589 613 0.91 12 19 1.7e-05 0.0021 18.9 0.7 1 23 617 640 617 640 0.97 13 19 0.0024 0.3 12.2 0.4 1 23 645 668 645 668 0.96 14 19 0.00012 0.015 16.2 0.5 1 23 673 696 673 696 0.96 15 19 0.00087 0.11 13.6 0.1 2 23 700 722 699 722 0.96 16 19 0.042 5.2 8.3 3.1 1 23 728 751 728 751 0.94 17 19 0.0016 0.2 12.7 0.2 1 23 757 779 757 779 0.98 18 19 2.4e-06 0.0003 21.6 1.5 1 23 785 807 785 807 0.98 19 19 6.5e-05 0.0081 17.1 0.1 1 23 813 838 813 838 0.97
Sequence Information
- Coding Sequence
- ATGGCAAGCAAATCTGAAACACTTACCAATTCAATGGATATGCCGAAATGTATTCGATGCTTTTGTGATCTTGTTGAtgatttccaattaatttttgatgataCGGGCTTGGAACTCGAACTACAGAAACTGCTGTCCGTTTGCTTCGATATGGATATTAAAATCCGCCTGGGTGAAATTCAGGCATTATGCGAAGATTGTCTAAATGAATTGATTGATACCTACGACATTATCCAGAAAAATGAATTGGAAGGTGCAGGACCTTCCGGTAGTTCAACAGGTGGCAGTCATattaaaaacgagaaaaaaaatggaaattctgATTCTGAAGATTACGAAGAATTGGACGAAGAGAAAGTCGTTCAACAATCGTCAAAAAAGGGAGATAATAATCTGAAGAAAGGTAGGTACAGTACGGAAATTAAAGATCCGAAGGACAAACTTGCTCCGACGTctaaaaacgttaaaaatgaTGGAACAACTCTTGAATCTATTGACGATGAAAGCCTTATGGAAGAAATAAAGGATGCAGATCATAATGATGCTATTGAAGGAAAAGCAGAGAACTCTGATTTAGAAGCTGAAGAAAAAGGTGAACAGGAAGATGGTGAATTGGAGTTTAATCAAGTTGATTATTTGGATGATTACGATGATGAAATAGATTTCAATGAATACAAATTGAAAGCCATTCAGAGCAAATTCTCTGATGTTGTATTccctgaagaaattaaatgtcgGTTATGCGATGTTAATGTAAAACACCATGTGGACGTAATGAACCACACACTCGAGAAGCACTGTGTGAAGGAGTTCGCGTATCCTTGCATTTTAGACCAGGATTGCGAATCAATGAGTTCCCAAGATCACCTAACGCTCCACTTGGTGTTTAGGCACTATGATTTGGATACATTGGCGATTTATACAAAGTGCCCGgaatgtgaaaaacgtttcaGTGATTTTCCTTCTTTCAACAAGCATAGCTGCTACCAACCACAGGTGAAATTGTCTAGAACAAAAGTGGATTGTGATGATTGcggaaaagtatttataacaaatagaAGATATCGATTTCATTTACAATATCATCTGGAGAAACGCCGGCCAAAGGCATGTTTTATTTGCGACAAACTTTTTAGGGATGAAGATGAATTCTTCGAGCATGTTATGTACAGTCATGAAAAGAATCTTGGATTTCTTTGCATAAGGTGCGATCGATCGTTCACAACCGTtgagacttttaaaaatcaccaaGATAGTCATAAAAACGAACGCAAATATGCTTGTGAATTTTGTCCTAAAACCTACGCCTACAAGCATTTTCTAACTGATCATATGatatcCGATCATGGTGTTAAAAGCGAATTCAAGTGTCATATCTGTGGGAAATACTGGGTTAACAAAACGTACCTAAACAACCATTTGTTAACTCATCAAAAGCCCAAGCCAACTGAAGTTATTTGTTGCGGTGAATGTGGATTTGTGGCAGTAGATGAAGCGGAAGCTGAGGCTCACTTGGAAGAGCACGAAGATAAAGAAGTTAACACTCACACTGAAGTTCTGGATAAAGTATACATTTGCGAATATTGTGAAGAGCCATTCAACACTCCAGCTCGTTTAAAAGAGCACAGAATATTacatataaagaaattgtattcCTGCACTATTTGTTCTACAACATTTAAAGACTATAAATCATTCAAACTTCATAAAGCACTGCATCCAAAGTACATGAACCgaaagaaatcatttaatgTGGCGCATTATTTGGTCTGTGATATGCCTGGCTGCTCGAAGAGTTATCTACAATGGGCCACACTAAGAGCTCACAAGAAGGCGCATGATAATCAATTCAAATGCACAAAATGCAAATCAGTATTTGAGAATTCctCGGAACTGGAGGAACACATGGAAAAAGTACACCAAGGGTACGATTTTAATTGCCAATTCTGCGATAAAGTATTTGGAACTCGATTGGCTCTCGGTGTACACATTTCAAGGAAGCATAACACAGaaaaatttttctgtgatCAATGTGACTTTAGTTACTCCTCCGAGGCTCTGTTGAAAAACCATCAGGAGACCGTACATAAAGATATATCCTGTGAGACTTGtggtattgttttaaaaaatttacgaaattataCTTTACATCAGAGAGTGGTTCATGAAAGggaaaaacgatttttctgcaaatattgcaaaaaaggatttttcaaaaattgcgaTGTTATTGCGCACGAGCAATCGGTTCATCTAAAagtaaaacgatttaaatGTGATTTGTGCCCTTATGAGGCTGTATACAAGGGCTCCTTCACGGTCCACATGAGAGCACACCGTAATGAAACACCTTTCGAGTGTCACCTGTGTGGACGCGGATTCCGAAAAAATGCGTCGTTGATAAGCCACATTAAACGGCACCAAAATATAAGAGAttttaaatgtCCCTTCGAAGGATGTGGATATGCATACGTTGAAAAAGGTAACCTTAACTTACATATTCGTCTTAAACATCCTAACGGCGAGCCGGCCCCACCAAATCAAGTCAGACGAAGTGGAGTAACTCGATCGTATTTTAATGTCCCCAGAACGGACGTCTTTATTGATGACGATGATGGCTTAGACTTCGGGTCGGATGAAGAACCACCAGCTAAATTGAGTCGAcgaaaaaattcagaagataGTAATCCTGATGATCCGGTCGCTAATATTCTAAAGGAACAGGAATCGGAGCCGGCCGTAATTGTGAGACGGAATACAAATGACCATGACTATATTGTGCACGAGAATACTTACGGAACAATTATGGAGGACTGCCAAGTGGCAGAAGTGGAAGTTACTTCGAATGAGTAG
- Protein Sequence
- MASKSETLTNSMDMPKCIRCFCDLVDDFQLIFDDTGLELELQKLLSVCFDMDIKIRLGEIQALCEDCLNELIDTYDIIQKNELEGAGPSGSSTGGSHIKNEKKNGNSDSEDYEELDEEKVVQQSSKKGDNNLKKGRYSTEIKDPKDKLAPTSKNVKNDGTTLESIDDESLMEEIKDADHNDAIEGKAENSDLEAEEKGEQEDGELEFNQVDYLDDYDDEIDFNEYKLKAIQSKFSDVVFPEEIKCRLCDVNVKHHVDVMNHTLEKHCVKEFAYPCILDQDCESMSSQDHLTLHLVFRHYDLDTLAIYTKCPECEKRFSDFPSFNKHSCYQPQVKLSRTKVDCDDCGKVFITNRRYRFHLQYHLEKRRPKACFICDKLFRDEDEFFEHVMYSHEKNLGFLCIRCDRSFTTVETFKNHQDSHKNERKYACEFCPKTYAYKHFLTDHMISDHGVKSEFKCHICGKYWVNKTYLNNHLLTHQKPKPTEVICCGECGFVAVDEAEAEAHLEEHEDKEVNTHTEVLDKVYICEYCEEPFNTPARLKEHRILHIKKLYSCTICSTTFKDYKSFKLHKALHPKYMNRKKSFNVAHYLVCDMPGCSKSYLQWATLRAHKKAHDNQFKCTKCKSVFENSSELEEHMEKVHQGYDFNCQFCDKVFGTRLALGVHISRKHNTEKFFCDQCDFSYSSEALLKNHQETVHKDISCETCGIVLKNLRNYTLHQRVVHEREKRFFCKYCKKGFFKNCDVIAHEQSVHLKVKRFKCDLCPYEAVYKGSFTVHMRAHRNETPFECHLCGRGFRKNASLISHIKRHQNIRDFKCPFEGCGYAYVEKGNLNLHIRLKHPNGEPAPPNQVRRSGVTRSYFNVPRTDVFIDDDDGLDFGSDEEPPAKLSRRKNSEDSNPDDPVANILKEQESEPAVIVRRNTNDHDYIVHENTYGTIMEDCQVAEVEVTSNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -