Basic Information

Insect: Proctacanthus coquilletti
Gene Symbol: -
Assembly: GCA_001932985.1
Location: MNCL01000470.1:9333-11093[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4 5e+02 2.0 0.6 1 23 16 38 16 38 0.84

2 18 0.0096 1.2 10.3 2.5 1 23 44 66 44 66 0.98

3 18 0.08 10 7.4 0.0 2 23 72 93 71 93 0.93

4 18 0.00045 0.056 14.5 0.1 1 21 100 120 100 121 0.95

5 18 9.5e-07 0.00012 22.9 0.4 1 23 128 150 128 150 0.96

6 18 4.4e-05 0.0054 17.7 0.6 1 23 156 179 156 179 0.97

7 18 0.0017 0.22 12.6 0.3 1 23 235 258 235 258 0.96

8 18 0.28 35 5.7 1.2 2 23 274 297 273 297 0.94

9 18 5.2e-06 0.00065 20.6 0.1 1 23 303 325 303 325 0.97

10 18 2.1e-05 0.0027 18.6 0.7 2 23 331 352 330 352 0.97

11 18 0.031 3.9 8.7 0.1 1 19 358 376 358 380 0.92

12 18 2.3e-06 0.00028 21.7 3.4 1 23 386 408 386 408 0.98

13 18 5e-05 0.0063 17.5 6.7 1 23 414 436 414 436 0.97

14 18 6.1e-07 7.6e-05 23.5 4.0 1 23 442 464 442 464 0.98

15 18 0.00012 0.014 16.3 4.6 1 23 470 492 470 492 0.98

16 18 2.5e-06 0.00031 21.6 3.7 1 23 498 520 498 520 0.99

17 18 5e-07 6.2e-05 23.8 1.2 1 23 526 548 526 548 0.99

18 18 5.6e-07 7e-05 23.6 1.1 1 23 554 576 554 576 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4	5e+02	2.0	0.6	1	23	16	38	16	38	0.84
2	18	0.0096	1.2	10.3	2.5	1	23	44	66	44	66	0.98
3	18	0.08	10	7.4	0.0	2	23	72	93	71	93	0.93
4	18	0.00045	0.056	14.5	0.1	1	21	100	120	100	121	0.95
5	18	9.5e-07	0.00012	22.9	0.4	1	23	128	150	128	150	0.96
6	18	4.4e-05	0.0054	17.7	0.6	1	23	156	179	156	179	0.97
7	18	0.0017	0.22	12.6	0.3	1	23	235	258	235	258	0.96
8	18	0.28	35	5.7	1.2	2	23	274	297	273	297	0.94
9	18	5.2e-06	0.00065	20.6	0.1	1	23	303	325	303	325	0.97
10	18	2.1e-05	0.0027	18.6	0.7	2	23	331	352	330	352	0.97
11	18	0.031	3.9	8.7	0.1	1	19	358	376	358	380	0.92
12	18	2.3e-06	0.00028	21.7	3.4	1	23	386	408	386	408	0.98
13	18	5e-05	0.0063	17.5	6.7	1	23	414	436	414	436	0.97
14	18	6.1e-07	7.6e-05	23.5	4.0	1	23	442	464	442	464	0.98
15	18	0.00012	0.014	16.3	4.6	1	23	470	492	470	492	0.98
16	18	2.5e-06	0.00031	21.6	3.7	1	23	498	520	498	520	0.99
17	18	5e-07	6.2e-05	23.8	1.2	1	23	526	548	526	548	0.99
18	18	5.6e-07	7e-05	23.6	1.1	1	23	554	576	554	576	0.99

Sequence Information

Coding Sequence: ATGGATCTTGATCACAACATGGAAAAGCAAGAGACACAAAGTGAGTTCTGTTGTGTTATGTGCTCTTCAGTTCCGGAAAACCTAAAAGATTTAGAATCTCATGTCCGGAACCATTTTAGTGAAGTTCAATTCACGTGTAATCAGTGCCCAGAGCAATTCATAATATTCGACAAATTTATACACCACTTGCGATACCATGGCAGTATGCAGATCCCCTGCCGATATTGTCCATGGGTAGGAAGTTCCTCAGACGAGTTTCTCGAGCATGAGAGCCTTCACCTGCCGGGGACGTTAATGTTTGATTGCTTCAGATGTGGTGAAGCATACAAAACTGCAGCGCAGCTGAAAATTCATAGACGCGCCTGCTTAGTCGTCAGAGAGTACTTGTGCAAAGATTGCGATAAGTCGTTCGCCAGATTGGACGACTTCTCTGTCCATTTGCGTGTCCACAAGAACTTGCCCGTATTTGAGtgtaaattttgcaataagaATTTTGCAATGCCAAGGAACTTCGCGGTTCATCTAAAGATGATCCACAAAGAGGATCTAGATAGCCAGCATCAGGCGATCATTGACTATGGACTAGAGCACGACGGAGCATATATAAATGCGCTGAAGGCTTATCAGAAGAACAGCCTGGAGGAGACGTCTGTTGCAGAGAAGTATGAGGCCATTCTCCAGAAATACGGCGTTTCGAAGTCGTTCACCTGCGGTTGGTGCAATTTATCCTTTATTAGAAGCATCACACTGGACCTCCATTATAAGCTTGTGCATGCAGAGGAAAACGACTCCATTAGTAAAGGAATTAAAGAAAGTTGTAAGTGCAATATTTGTAGCAATGTGGGATTTACATCTCGTATCGAGCTCGGGCTGCACATGCAAAGAACTCACAACGGCTGTAAGCCCTACGCGTGCAATTTGTGCGATCTTCGATTCCCTAGAGCCAGCACACTTGCGAGACACCTCAAGTGGCATAAACAGGATGGATCAGAGTGCAAGTACTGTAAAAAGTCCTTTGTTTACCGAGCATCTCTGGACGCCCATTTAAAACTCCACGAAGGACCAGAAGTCTTTTTATGTTCCACCTGCGAAATTCCTTATTCTAGTAAAGCAGCGCTTGCTAAGCACGAGTGGATTCATTCGGATGGAAGGCCACACGAGTGTGACTATTGTGAAAAGCGGTTTGTGCAAAAGAGCGACAAACAGAAACACATGCGGGTTCATACTGGAGAGAAACCCTTTACATGCCACACCTGCGGCAAGTCATTTTCGCATCTAACGAGCTTTAAGAAGCATTCGCTGATTCACACCGAAATGAAGGAACACCAGTGTTTCACGTgtggaaaaacttttaagcgAAAGGCGAATCTACTCGTCCATACGAGGAGTCACACGGGCGTCAGGCCGTACTCATGTAAAACTTGCCACAAATCATTCCTCACATCGGGACACTTATCGGATCACATCCGGATACATTCTGGTGAGAAGAGGTTTAAGTGCAGCACGTGTGATAAAGCCTTCATTCATAAGAGCAGCCTGGATAAGCACAAGCGGGTACACACTGGCGAGAGGCCCTATAAATGCAGCGCCTGTGAGAAATCCTTCCCGCAGCAGAGTCACCTGGATGTGCACATGAGGATCCATACAGACGAAAAGCCCTATACCTGCGATATCTGCTACAAAAGCTTCAAGCGCACTGACGCCCTCCTCAACCACGTGAGGACTCACACCAAGCAGGGGGTTGATAGTAACGTGATCTAA
Protein Sequence: MDLDHNMEKQETQSEFCCVMCSSVPENLKDLESHVRNHFSEVQFTCNQCPEQFIIFDKFIHHLRYHGSMQIPCRYCPWVGSSSDEFLEHESLHLPGTLMFDCFRCGEAYKTAAQLKIHRRACLVVREYLCKDCDKSFARLDDFSVHLRVHKNLPVFECKFCNKNFAMPRNFAVHLKMIHKEDLDSQHQAIIDYGLEHDGAYINALKAYQKNSLEETSVAEKYEAILQKYGVSKSFTCGWCNLSFIRSITLDLHYKLVHAEENDSISKGIKESCKCNICSNVGFTSRIELGLHMQRTHNGCKPYACNLCDLRFPRASTLARHLKWHKQDGSECKYCKKSFVYRASLDAHLKLHEGPEVFLCSTCEIPYSSKAALAKHEWIHSDGRPHECDYCEKRFVQKSDKQKHMRVHTGEKPFTCHTCGKSFSHLTSFKKHSLIHTEMKEHQCFTCGKTFKRKANLLVHTRSHTGVRPYSCKTCHKSFLTSGHLSDHIRIHSGEKRFKCSTCDKAFIHKSSLDKHKRVHTGERPYKCSACEKSFPQQSHLDVHMRIHTDEKPYTCDICYKSFKRTDALLNHVRTHTKQGVDSNVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -