Pcoq005740.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- bab1
- Assembly
- GCA_001932985.1
- Location
- MNCL01000086.1:167816-312700[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 4.8e-14 52.3 0.0 1 43 398 441 398 443 0.95 2 2 0.11 5e+02 1.1 1.2 1 15 534 548 534 562 0.74
Sequence Information
- Coding Sequence
- ATGCCATCCGAGACGCCTCCACCGAAAATCTCCTCACCAGGGACAACATCGGCCTCTGACAAAATGCGCCCCAAGACCCCAGCCTTAACCCCGTCCCCCCAAGAGGGCTCTCAGACCCCCTTAGCTAACCCACAGATTCATCACTCACAGACGGCCACAGCCAGCGGCTCCGGATCTGGTTCCGGGTCGCAACAGTTCTGCCTCAGGTGGAACAACTATCAGACGAACCTGACGAGCGTTTTCGATCAGCTCCTCCAGAATGAGTCCTTCGTGGACGTGACCTTGGCCTGCGACGGGCAATCGATCAAGGCCCACAAGATGGTCCTATCCGCCTGCAGTCCCTACTTCCAAGCCCTGTTCTTCGACAACCCCTGCCAGCACCCGATCATCATCATGCGGGACATTAAGTGGCCCGAGCTGAAGGCCGCCGTTGAATTCATGTACAAGGGCGAGATCAACGTCAGCCAAGAACAGATCGGACCACTCCTCAGGGTGGCTGAGATGTTGAAGATACGCGGCCTCGCCGACGTCAATGGCGAACAGGACGCGACCCCGGCTACCCCTGCCCAGTCCAGCTTCGGGTCCGGATCGTCATCTGAGACGGCCACTAAGAAAGCACGTGTGTCCCGCGAATGGGAGCTGAGCAACCTAGACACGAACACACCGTCCGGCAACCGTAACAGAAAAAGACGGTGGCCGTCCGGTGACGCCGCGGGCTCAGACAGCCCCGTGGGTGGTATCAGAACTGGTTCCGGCACCCCCACTCCCGAAAACAATGATATTGCATCGCCTGTTGCTGGAACTGCAGCTGCAACTGGTACATCACAGATCCCACATCCGGCCGCCACTCCGAACACCATGCCTTCCTTCCCCATTCCAACCCCGCTCGAGTCCATGGCCCTCTCCTCGCTGGGAATGAGTCACGCCGATGACATGGAGATTAAACCTGGAATAGCCGAGATGATCCGCGAGGAGGAAAGGTGTGCCAATTTAGTTGTCTGTAAGATGCCTATGAACCTTGAAGTTGCCAAACTTATGGAAAACTCTCACGCATGGCTGGGAGCATCGACTTCGTCAATAGCCGACAGTTACCAGTACCAATTGCAATCGATGTGGCAAAAATGCTGGAACaccaatcaaaatttaatgcatcATCTGAGATTTCGAGAACGCGGCCCGCTGAAATCCTGGCGTCCCGAGACCATGGCTGAGGCGATCTTCAGTGTATTGAAGGAAGGACTCTCGTTGTCCCAGGCCGCCCGCAAATACGACATTCCATATCCGACCTTCGTCCTGTACGCGAATCGAGTACACAATATGCTGGGTCCTTCGATCGACGGTGGAACAGACCTTCGACCGAAGGGCAGAGGTCGGCCGCAACGGATACTCCTCGGTATCTGGCCGGACGAGCACATCAAGGGTGTTATTAAGACGGTGGTTTTCCGGGACGCGAAGGAGTTGAAGGACGACAGCATGCACCTATCGTATGGAAGACACTCGCCTGTTTTTCCCTTTCAAGAAGGTGCATTGAATTATCCCGGAGCTCCCTGTTCAAACGGACTGCCCAACCAGCCGGCCGCATCTGTTGCTGAAACAATGACCCCAGAAGCGACCGCAGCCGCTGTGGCCGCTGTAGCCCATGGTATCAGGCAACAAATGCAGATGGCGGCGGCTGCCCAGCAACACCATACAGACGCTGCATCGAACTTGTTCAACCTTCCGGCTCATTTACAGCATACAGCAGGCAACCCAGGTGTCCCACTACCAAAGCAGAACTCACCGGCATCAGGTGGACAGATGAATACCAATCAGCAGAGGCACACGTCACCATCCATACCAGGTCTTCCGAATCCCGCAGCCTTAGGGCTTCCCGGAATTCCAAACATGCACATGGTGCCCGGCCTCAACTCGAGTACTAGTCAGGCAGTCGGCGCGTCGGCGGGCTCCGTTCCACATTCTTCCAACGCTGGCAACCAGCAGACGACAGTGACGCCAGCGCACCTACCACTGAACACCTCAACAGGTAGTGCGCCATCCAATACATCCCGGAACGAGTCGCCATCGGAGTCGGCGCACGATCTACGCATGAACAGTCCCGAGGAGAGCCCTCTAAACTCGCCGTTAGGGATGCCCCTGGAACCAGCTGTTAATCTAGCGGTAGGTGTAAGTGGAATGGCCTACAAGCCCTCACGAGGCTACTCATCCCCTCGACCTGAACACCTCTTCCAGGAAGATATCGCCGACCTGGTTGGGAACACCTCACGCAACTGTCCACCGAACATGAGCAGCTTCAAGGAGCCGCCGTCAGGGATTAAAATGGAGCCGATGGCGGAATGCCGCAGCGAGTAA
- Protein Sequence
- MPSETPPPKISSPGTTSASDKMRPKTPALTPSPQEGSQTPLANPQIHHSQTATASGSGSGSGSQQFCLRWNNYQTNLTSVFDQLLQNESFVDVTLACDGQSIKAHKMVLSACSPYFQALFFDNPCQHPIIIMRDIKWPELKAAVEFMYKGEINVSQEQIGPLLRVAEMLKIRGLADVNGEQDATPATPAQSSFGSGSSSETATKKARVSREWELSNLDTNTPSGNRNRKRRWPSGDAAGSDSPVGGIRTGSGTPTPENNDIASPVAGTAAATGTSQIPHPAATPNTMPSFPIPTPLESMALSSLGMSHADDMEIKPGIAEMIREEERCANLVVCKMPMNLEVAKLMENSHAWLGASTSSIADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKDDSMHLSYGRHSPVFPFQEGALNYPGAPCSNGLPNQPAASVAETMTPEATAAAVAAVAHGIRQQMQMAAAAQQHHTDAASNLFNLPAHLQHTAGNPGVPLPKQNSPASGGQMNTNQQRHTSPSIPGLPNPAALGLPGIPNMHMVPGLNSSTSQAVGASAGSVPHSSNAGNQQTTVTPAHLPLNTSTGSAPSNTSRNESPSESAHDLRMNSPEESPLNSPLGMPLEPAVNLAVGVSGMAYKPSRGYSSPRPEHLFQEDIADLVGNTSRNCPPNMSSFKEPPSGIKMEPMAECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01256490;
- 90% Identity
- iTF_01256490;
- 80% Identity
- iTF_01256490;