Basic Information

Insect: Proctacanthus coquilletti
Gene Symbol: lolal
Assembly: GCA_001932985.1
Location: MNCL01000146.1:194559-234791[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.6e-11 1.2e-07 31.9 0.0 1 38 496 534 496 539 0.90

2 4 3.1e-14 1.4e-10 41.3 0.1 2 39 551 588 550 591 0.94

3 4 3e-18 1.3e-14 54.1 0.0 1 45 605 650 605 650 0.98

4 4 7.8e-19 3.4e-15 56.0 0.1 1 44 657 701 657 702 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.6e-11	1.2e-07	31.9	0.0	1	38	496	534	496	539	0.90
2	4	3.1e-14	1.4e-10	41.3	0.1	2	39	551	588	550	591	0.94
3	4	3e-18	1.3e-14	54.1	0.0	1	45	605	650	605	650	0.98
4	4	7.8e-19	3.4e-15	56.0	0.1	1	44	657	701	657	702	0.96

Sequence Information

Coding Sequence: ATGGCTGTCAGAAGTCATCAGTATTTCAGTTTGCGATGGAATAACTATCAGAGTACGATGACGTCAGTATTTCAGCAGCTGAGAGAGGATCAATCCTTTGTGGATGTCACACTTTCATGTGAAAATGGATCTCTCAAGGCACACAAGgtCGTTTTGTCCGCTTGTTCCTCATATTTCCAGAAGTTACTTTTGGAAAATCCCTGCAAACATCCGACCATAATTCTTCCTGCAGACATAATTTACACAGATCTCAAGACGATCATTGACTTTGTCTATCGTGGTGAAATTGATGTTACAGAATCGGAGCTTCAGGGTCTACTACGAACTGCTGAACAGTTAAAGATTAAAGGTCTTTGTGAGACCGCAGAAACAGTCGATGAGGTATCGTCAGAAACAgcgacaacaacaacaataacagtTCCAGAATCGATACCTATTACAAATATCGCAAACACCACAAATACTCTAAGCCACGGAAATAATACGACCCAGAGAAAGACACGTATTAGAAAACGTTCTAAGTCACCTGACACAAATCAATCGATCATCGCAGCAAATCAGACTTTCAACACATCAGCGGtcgtaaatttaaatccatcATCGACTTCGACAATCACTTCTGGAACGGCGGTGTCTAGTGGTAACGCTATAACGACAACTGCAATTTCTCACTTTAAAAGCGAACACCAGCCTCAAGTGACCAGTTCGAATACAGACTCTGTTTCTGAGGATATTGGATCGAAGCcaacaaaaatttgcaaaaccgAAGATTCAGCAAATAATGGAAGCGGGGTTGTCACCCCAGGGACTGCTATCGTAACGCAAATTGTGGTTGCACGCGACggtaaagataaaaacatgACCAGTTTGGGTATGGGAATGaacGGTGGTCTGCTGGGCGTACCAATGGGCTTCCTAGACTTTGCGCCGGAACCACCGGCACCATCTGCCACCCCAGTTACAGAGCACGTTGATATGTCGTGTCCACCGAGTGCTGACACCAGAGATTTATCAAATCCCACCGAAGCCCTCGATATAGACAATCAGATCGCCCAACATATAATCCATCGGCTTGATCAATCGCCAATGCATCAAATGCAACATCAGACTGCAACCGACGATACTAACTCGAATCTCATCCAGAACATCAAGAGCGAAGTAGTCGATGTTAAACATCACGTTCAGCAACAACTTCAAACTCAACAATCACAACAACACCAACAACATAGCCACCATCAAGATATATCCGGATCTACGGTCATGGAGATCGATCCAAGCAATATAAAACACGAGCCGGGCATGATCATAACCCCGGAAATCGTCACTATGATGACCACGGGACATATGGACATATACAATTCGGATACAAGTGATGACTCTTTGATGATTGCGAATGGTTCTCCCAATGATAACAATGAACCACATTACACAAATCTGGATCAACAACAGGACACGAAATGCCAACCGAATGGGGCGAAGACTTGGACTCAAGAGGACATGAACTCCGCACTAGAAGctcttaaaaatcaaaatatgagCCTAACGAAGGCTTCTGTGACATATGGCATTCCACCGACAACATTGTGGCAAAGGGCTCATCGAATGGGTATTGATACACCGAAGAAAGAAGGAACAACAAAATCGTGGAATGAAGAAGCATTAAACAATGCCCTAGAGGCTCTTCGGACCGGACAAATATCAGCGAACAAAGCCTCAAAGGCATACGGAATTCCGTCCTCAACTTTGTACAAAATAGCACGTAGAGAAGGTATACGACTAGCGGCCCCATTTAATGCAGCTCCAACAACATGGACACCAGAAGACTTGGAACGTGCTTTGGAAGCAATTCGTGCTGGCCATACATCCGTCCAAAAAGCTAGCACTGAATTTGGTATTCCAACAGGAACATTATACGGCCGTTGTAAGAGAGAGGGAATTGAATTATCTCGATCAAATCCCACACCATGGTCTGAAGATGCTATGAACGAGGCTTTAGTCGCAGTGagAGTGGGACATATGTCCATAAATCAAGCCGCTATCCATTACAACTTACCATACAGCTCGCTCTATGGTCGGTTTAAGCGGGGGAAATATGACACGAGTGCAACTAATGCCAATAGTAATAACTCCAGTGCAAATACAAGTGGCAACATCGAGATGATTGAGCATAGCCCAGAGAATTCGTTGCACATATTTCAGCAATTTCAATACAGTCCCGGGCCGTCAAATACCCAGACACATCATCaccaacagcagcaacaacctcaacagcaacaacaacagcaacaacagcagcaacaacagcagcaacaacagcaagcACATCAACATCAGCCGCAACATCAACAACACCAACCACACCAGCAACATCATAttcaacagcagcagcaacaacagcaacatcAACAACACCCTCAACAGCATCATCCACAACATCAACAACACCTTCAACAACAACAGGATGTCGTGACCTCGTCTAGCCAAGTTCACACACAGACCGGccaaattcaacaaatttaccACCACCACAGCACGTCGGAGAGGAGTTGA
Protein Sequence: MAVRSHQYFSLRWNNYQSTMTSVFQQLREDQSFVDVTLSCENGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPADIIYTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAETVDEVSSETATTTTITVPESIPITNIANTTNTLSHGNNTTQRKTRIRKRSKSPDTNQSIIAANQTFNTSAVVNLNPSSTSTITSGTAVSSGNAITTTAISHFKSEHQPQVTSSNTDSVSEDIGSKPTKICKTEDSANNGSGVVTPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCPPSADTRDLSNPTEALDIDNQIAQHIIHRLDQSPMHQMQHQTATDDTNSNLIQNIKSEVVDVKHHVQQQLQTQQSQQHQQHSHHQDISGSTVMEIDPSNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSDDSLMIANGSPNDNNEPHYTNLDQQQDTKCQPNGAKTWTQEDMNSALEALKNQNMSLTKASVTYGIPPTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTSATNANSNNSSANTSGNIEMIEHSPENSLHIFQQFQYSPGPSNTQTHHHQQQQQPQQQQQQQQQQQQQQQQQQAHQHQPQHQQHQPHQQHHIQQQQQQQQHQQHPQQHHPQHQQHLQQQQDVVTSSSQVHTQTGQIQQIYHHHSTSERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01431749;
90% Identity: iTF_00628156;
80% Identity: iTF_01256500;