Pper006626.1
Basic Information
- Insect
- Priocnemis perturbator
- Gene Symbol
- -
- Assembly
- GCA_963942575.1
- Location
- OZ012644.1:10849470-10852239[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.3 6.3e+02 1.6 2.4 1 10 326 335 326 354 0.72 2 15 0.037 3.7 8.7 0.4 1 23 356 379 356 379 0.91 3 15 1e-06 0.0001 23.0 1.1 1 23 385 407 385 407 0.97 4 15 0.11 11 7.2 4.8 1 23 495 517 495 517 0.93 5 15 0.0044 0.44 11.5 0.4 1 23 524 547 524 547 0.91 6 15 0.00072 0.072 14.0 3.9 1 23 553 575 553 575 0.97 7 15 0.0024 0.24 12.4 2.6 1 23 581 603 581 603 0.98 8 15 4.5e-06 0.00045 21.0 1.2 1 23 609 631 609 631 0.98 9 15 0.011 1.1 10.3 0.5 1 23 644 667 644 667 0.97 10 15 3.5e-05 0.0035 18.2 3.4 1 23 683 706 683 706 0.97 11 15 0.00013 0.013 16.4 0.2 1 23 714 737 714 737 0.98 12 15 0.00019 0.019 15.8 0.9 1 23 743 765 743 765 0.98 13 15 0.00075 0.075 14.0 6.2 1 23 771 793 771 793 0.98 14 15 1.3e-05 0.0013 19.5 1.5 1 23 799 822 799 822 0.98 15 15 0.12 12 7.0 0.2 2 23 828 849 827 849 0.96
Sequence Information
- Coding Sequence
- ATGGATGTTTCAAGCGGGGTCATATCATGTCGTCTATGTGGCGTAAGCCTGCAGAATGTGAAGTCCAAATATATTTTCGAAGAGGCAACTAATTTATCCCGGATAATAGCCGAGACATTATCGATTAATGTATCTTTGAATGACAATGTTTCAAAATATGTATGCCTTACTTGCTGGGAAAAAGTAATACATCATTATAACTTTGTTCAAGACGTTTTGGAACATGAAAGAAAACTGGACAAAGCAGTAAAATTAGCACCCAAATTTTCTGACATCCCAAACATCCAGAAAGCTGAAATTATTGACAACTTTTCACAAAGCCATGGTGATACAATACACACATGTCCAAATTGTAATGTAAATTTAATCATTTTACTATCTTGTACTAGACAAGGTTATGATTATAGTTTACAAATTTCTTTGGCTGTTGTGAGTCACGGTGAAAAGCTACAGTCAACATGTCAGAGTATGATGCAAAGTCCTGAGACTGTGCAGAATTTTGCTAAGATGCGTAAAGGTAGCGAAAACATTAACGAGAAATTTAACCTGCCTGAAACTTCAGCAGAGGAAGATGCTGAAAATCATGAAGATAGTGTGAACAAAGCTTTGCACATTATACAGGGAACAAAAGAGAAGAATTGTGATGAAACCTTAAAATCTATTATTTGCAGTACAGGTAGCTACACCACACCCATGAGGAAAAGTACGAAGCCTGAACAGCAAGAGAGTGTTTGTAAGGTTTTTAGCAAAAATGTCATGGCACAGCAGCCAGAGCCATTCAAGTATGAAATTGCCTCAGGTTTGTCAAATTATAATCTTGACTGTGTAACTACATTGGCAAGGGCAGATTCTGCCAATGAAAATGTCTGTCTCAGTAGTAACGTCAAATATGAGCTTGAACGACAAAGCAGTAGAAATGTAATTAAAGGTTATGCTAATTTTATGGAGAACGATATGATTAAATGTTGTTCCAAGTTTACATGCAAAATTTGTGGTATTCAATATTTATCGGAGttgaaatataaatttcatATGGAAAGGCACAAAATGAATAAGATACACAAGTACATATGCCCTCTGTGTGATAAAGAAGCCAGCAGTGAAAATATGCTGTGGGATCATTATTTTCACAATCATAAAAGTTCAAGGCGTTATGCGTGCACCAAATGTGGTAAAAGATTTGCAAAGTGGTCAAAACTAAACAGTCATCAAAAAGGACACAATCACTTGAGTGCCACAGAAGCACATTCTGAAAACTCTGGAAAAAATGTACACGTAGATGATGGCAGTAGCGCTAACCACAGCTTAACCGGAACAGGATCGTGCGGGAAAATATCCGTAAACTGTAGTCTTTGTGGAAAGATAATTTCCGACTTGGATCCTGATGCCATAAATGACTTGGTAACATGCGCTTCATGCGAAGACCCCACGCTCTCGTTAATGGTTGACGGTAACGAAATAAAAGTGATTTCTCCCAGGCAGTATCACTGTTCACAATGTCCGAAACATTTCGTGCGTAAGGAAAGACTTGAATTTCATGAGATGAGGCACaacgaaaatatgaaagaatttATTTGCAGCACATGTGGGAAGGAATTTAGCGCGGAAAATTCGTTGTATGAGCATTATCTATTCGTTCACAAGGGAGCAAGGCCGCACATTTGTGAATTGTGCGGAAAGTCCTTTCAGTTGAAGGCACGACTGAAGGAACACCATCGAACTCATACAGGTGAACGTCCGTACCGCTGTGACATGTGCGGCCAACGTTGTATGACCACTAATGCTTTGAAACTTCATCGAAAGATACACTTTTCTCAGAATCGGTACATCTGCAACGTATGCGACAAGTCATTCAGTAAAAAGCAAAACATGAATGAACACCTAGAGAAACATTGGAAGCGTGATAGAAACGTACCGTTGTCGCGATTATTCACGTGTCCTCTTTGCATTGAGGAATTCCCTACGTACCGGATGTTAAAGTACCACATGATCAAAACACATGAAGTGAGTAATGAAGATCCAATATTAACGGAACAAAGACCATGGTACGAGTGCGATGATTGTCATGAAAAATTTAAACATCAAATGTCATTGAAAGCACATAGGGAaagagcacatgaggggaaggtaAATCCAAGCTATGAATGCGACGAGTGCGGTGCCAGTTACAGAATTAAACAATTGCTTATTAATCATATAAAGAGTAAACACATCGGAGAGAAACGGTACAAATGTGCGCAATGTCAGAAAGGTTTTAACGACACGAAATCTTTATACAATCATATTCTATTGCATACCGGTAAAAAACCGTTTACATGTGAATACTGCAATATGAGTTTTAGGAGGAAAGATTCAAGGGATCATCATCGTAGAAAACATACCGGTGAACAGCCCTATCAATGTCCGGACTGCGGAGAATCATTTTCCACGTACAATTCTCGATCAAAGCATCGCAAACGCGAACACGGAGAAGCAGAGTTGGAATGTCCGGAGTGCGGAGATAGATGTGCTGGGCAACAAGAAATTCGAGTGCATTTGAATAAACATTTGGGGGAGAAACTGAAAATCTTACGAAGTTCGAACCTGAGACAATGA
- Protein Sequence
- MDVSSGVISCRLCGVSLQNVKSKYIFEEATNLSRIIAETLSINVSLNDNVSKYVCLTCWEKVIHHYNFVQDVLEHERKLDKAVKLAPKFSDIPNIQKAEIIDNFSQSHGDTIHTCPNCNVNLIILLSCTRQGYDYSLQISLAVVSHGEKLQSTCQSMMQSPETVQNFAKMRKGSENINEKFNLPETSAEEDAENHEDSVNKALHIIQGTKEKNCDETLKSIICSTGSYTTPMRKSTKPEQQESVCKVFSKNVMAQQPEPFKYEIASGLSNYNLDCVTTLARADSANENVCLSSNVKYELERQSSRNVIKGYANFMENDMIKCCSKFTCKICGIQYLSELKYKFHMERHKMNKIHKYICPLCDKEASSENMLWDHYFHNHKSSRRYACTKCGKRFAKWSKLNSHQKGHNHLSATEAHSENSGKNVHVDDGSSANHSLTGTGSCGKISVNCSLCGKIISDLDPDAINDLVTCASCEDPTLSLMVDGNEIKVISPRQYHCSQCPKHFVRKERLEFHEMRHNENMKEFICSTCGKEFSAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRTHTGERPYRCDMCGQRCMTTNALKLHRKIHFSQNRYICNVCDKSFSKKQNMNEHLEKHWKRDRNVPLSRLFTCPLCIEEFPTYRMLKYHMIKTHEVSNEDPILTEQRPWYECDDCHEKFKHQMSLKAHRERAHEGKVNPSYECDECGASYRIKQLLINHIKSKHIGEKRYKCAQCQKGFNDTKSLYNHILLHTGKKPFTCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNSRSKHRKREHGEAELECPECGDRCAGQQEIRVHLNKHLGEKLKILRSSNLRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -