Basic Information

Insect: Priocnemis perturbator
Gene Symbol: Snai1_1
Assembly: GCA_963942575.1
Location: OZ012657.1:2448013-2451041[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.2 9.2e+02 1.1 0.1 3 10 65 72 63 79 0.64

2 13 0.00074 0.074 14.0 0.2 1 23 241 263 241 263 0.94

3 13 2.8e-05 0.0027 18.5 1.2 1 23 271 293 271 293 0.98

4 13 6.2e-06 0.00062 20.5 0.2 2 23 301 322 300 322 0.97

5 13 2.1e-06 0.00021 22.0 0.8 1 23 328 350 328 350 0.99

6 13 3.5e-05 0.0035 18.2 2.2 1 23 357 379 357 379 0.98

7 13 4.6e-06 0.00045 21.0 0.6 1 23 385 407 385 407 0.96

8 13 1.3e-05 0.0012 19.6 0.2 1 23 413 435 413 435 0.98

9 13 6.5e-07 6.4e-05 23.6 1.2 1 23 441 464 441 464 0.96

10 13 3.4e-06 0.00034 21.4 0.5 1 23 470 493 470 493 0.96

11 13 1.2e-06 0.00012 22.8 2.0 1 23 499 521 499 521 0.99

12 13 8.4e-05 0.0083 17.0 0.4 1 23 527 549 527 549 0.94

13 13 0.00026 0.026 15.4 0.1 1 23 555 579 555 579 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.2	9.2e+02	1.1	0.1	3	10	65	72	63	79	0.64
2	13	0.00074	0.074	14.0	0.2	1	23	241	263	241	263	0.94
3	13	2.8e-05	0.0027	18.5	1.2	1	23	271	293	271	293	0.98
4	13	6.2e-06	0.00062	20.5	0.2	2	23	301	322	300	322	0.97
5	13	2.1e-06	0.00021	22.0	0.8	1	23	328	350	328	350	0.99
6	13	3.5e-05	0.0035	18.2	2.2	1	23	357	379	357	379	0.98
7	13	4.6e-06	0.00045	21.0	0.6	1	23	385	407	385	407	0.96
8	13	1.3e-05	0.0012	19.6	0.2	1	23	413	435	413	435	0.98
9	13	6.5e-07	6.4e-05	23.6	1.2	1	23	441	464	441	464	0.96
10	13	3.4e-06	0.00034	21.4	0.5	1	23	470	493	470	493	0.96
11	13	1.2e-06	0.00012	22.8	2.0	1	23	499	521	499	521	0.99
12	13	8.4e-05	0.0083	17.0	0.4	1	23	527	549	527	549	0.94
13	13	0.00026	0.026	15.4	0.1	1	23	555	579	555	579	0.94

Sequence Information

Coding Sequence: ATGACAGCTGATGCGGAGAAAGATTGTACGCACTGCTTGGTCTGCAATAGTAAAGTTGGAGTCTCCACTAGGAACAGTATTCGTATATTCAGTGAGACTTCTTTAACCTCTACGGAGAAGCCATTGGCCGATACTATATGTACTGTGCTGGAAACTGATATTAATGAGGAGACTGTACACTCTCTTGTTATATGTAAAAAATGTTTTAAATTATTCAATGAAATTGACGAGCTAGAATGTAGATTAAATGAGGTGAAATTAGAGCTGTTTAACAATTACAAAAAGACTATAAAAAAGGTGACTGACATTCTGCAAAACGACGATGAGTACACTGACCACGATTATATAGAAAATTTGGAAGGTCAAGGCTTGGAGTCGTGTGTCAAAGTTATTAGTGAACATGAGgaaggagaagagaaagagtatgagggagaggaggaaagacaagaagaagaagaagaagaagaagatgaatcCATTGAAGATTCAGAGGAAGCTCTGATGAAGATCGAGTCATTGATTGAGCCAAAATCGTCTGACGAGAAAAAAAGACTCAAGAAGAATAAATTAAATCCGAAAGTGGAAGTAATTAACGAGCAAGTGGTAACCAGGGACGGACCTGTGTACACTTGCTTATTGTGTACGAACGAAGACGACAAAGGTGTCGGCGAtgcaaaatgtataatagctcATATGAAAACCGTACACGACACGCGCTTGTATATTTGTGATATATGCGGACTGGACTTTAAAAAGCGGAACGAACTCTCGTTGCATCTGGATGACCACGTGGCGAAGGAGGAGGGCGATTTTCAGTGCGAGGTCTGCAACCGAATATTCAGTAACCTGCGGCTGTTCCGAATTCACAAAAGAATTCATTATCCGCAAGTGAAATCGTGGCCCTGCGAAACTTGCGGCAAGAGATATAGTTCTAGAAATTTATTGGAGGAACACATTAACACTCATACTGGTGTGCGTCCGTACGTGTGCGAAACTTGCGGCAAGGATTTTGCATCAAAATACACGTACAAGGCCCACGTTAAGACTCACGAGGTGCGCCCTCGCCCGTTTGAATGTTCTCAATGCAATAAAACGTTCCTGAGTCAGCAAAACCTTAACCAACACGAAAGAACGCACAACGGAGTCAAGGAGTACGTGTGTCATCAATGTGGTAAAGCCTTTGGTTCACCGCACAATTTGGAAGTGCACAACATCGTGCACACGGGATATAAGCCTTACATCTGTCGAATGTGCGGTAAAGCATTCGCTCGCAAAGCTGAGATTAGAGATCACGAGCGAACTCATACGGGAGAAAAGCCTTATCAATGTGAATTTTGCGGTGCTACGTTTAGTCAAAGGTCGAACCTGCAGTCGCACAAACGTGCAACGCATTACAATGACAAACGATACAAGTGCGACGATTGTGGGAAAGGCTTCAAGCGAAGAAGACTCCTGGATTATCACATAAAAGCCGCTCACACCGGCGAAAGGCCTTACAAATGTGAGATATGCACAGCGACATTCGTGTACCCGGAACATTTTAAGAAGCACATGCGCATTCATACGGGAGAGAAGCCGTATCTGTGCGAGGTTTGCGGAAAAGCGTTTAACAGTAGAGATAACAGAAACGCTCATCGCTTCATTCACAGTGATAAGAAGCCTTATGAGTGCTTAGTCTGTGGCATGGGTTTCATGAGAAAGCCACTGCTTTATGCTCATATGCAGACTCAGGGTCACTTAAATGACACTATAGTTGTAAATCAGCCACGTTTGACCACGGAGGATGATCAAGTTATAACCATTCCGGGTGGCAATGTCGAGTTATTAATGGATGACGTTGAAAATGATCAGTTGGAAGAAACTGGGCTTTACGTTACCGAATTGAAAGATCACGTTATCATACATCAAGACAACGAGGATCAGATATACGAGGAGGATGTGTTAAATATGCCTGCCGAGGAACATGTTGCTACCGAGGAAGTGGAACATCTCGTTGTGGACGGGCAGATGGACTTTCCGGAGAGTGAAGTGATGGAGTGCAAAACCGAAGATCATGAACAGGGCGAAGAAGTGTATAGCTATAACGATAGTGAAGAAGGAGAGACAATTGTGGTGCCTGCTAGCTCAGAGTATAAAGAAATGGTAGATAGCGATAAGAACGCTGTTCGTCTAGTGCAAATAAGATTCCCGTCGTCGGTCAGCggtgagggtaggaattggttgagcTTAGTACAAAATACGTGA
Protein Sequence: MTADAEKDCTHCLVCNSKVGVSTRNSIRIFSETSLTSTEKPLADTICTVLETDINEETVHSLVICKKCFKLFNEIDELECRLNEVKLELFNNYKKTIKKVTDILQNDDEYTDHDYIENLEGQGLESCVKVISEHEEGEEKEYEGEEERQEEEEEEEDESIEDSEEALMKIESLIEPKSSDEKKRLKKNKLNPKVEVINEQVVTRDGPVYTCLLCTNEDDKGVGDAKCIIAHMKTVHDTRLYICDICGLDFKKRNELSLHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHVKTHEVRPRPFECSQCNKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPGGNVELLMDDVENDQLEETGLYVTELKDHVIIHQDNEDQIYEEDVLNMPAEEHVATEEVEHLVVDGQMDFPESEVMECKTEDHEQGEEVYSYNDSEEGETIVVPASSEYKEMVDSDKNAVRLVQIRFPSSVSGEGRNWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01454340;
90% Identity: iTF_00393744;
80% Identity: -