Basic Information

Insect: Prenolepis imparis
Gene Symbol: -
Assembly: GCA_030444845.1
Location: JAUDTA010000011.1:503284-510575[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.89 1.7e+02 4.4 0.7 2 23 205 226 205 227 0.90

2 15 5.5 1.1e+03 1.9 4.9 1 23 233 255 233 255 0.96

3 15 0.00064 0.13 14.2 0.3 2 23 261 282 260 282 0.97

4 15 0.23 44 6.2 8.5 2 21 567 586 566 589 0.94

5 15 2.6 5.2e+02 2.9 1.0 1 23 655 677 655 677 0.82

6 15 0.88 1.7e+02 4.4 0.0 3 23 896 916 894 916 0.97

7 15 0.0018 0.35 12.8 0.3 1 23 924 946 924 946 0.98

8 15 0.067 13 7.9 1.0 2 23 1048 1069 1047 1069 0.95

9 15 1.4 2.8e+02 3.7 0.8 3 23 1081 1101 1079 1101 0.93

10 15 0.017 3.2 9.8 1.3 1 23 1178 1200 1178 1200 0.96

11 15 0.041 8.1 8.5 0.3 1 23 1271 1293 1271 1293 0.97

12 15 3.1e-05 0.0062 18.4 0.6 1 23 1299 1321 1299 1321 0.97

13 15 0.004 0.78 11.7 2.9 1 23 1387 1409 1387 1409 0.98

14 15 0.00038 0.074 15.0 1.5 1 23 1415 1437 1415 1437 0.99

15 15 1.4 2.8e+02 3.7 0.4 2 23 1524 1545 1523 1545 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.89	1.7e+02	4.4	0.7	2	23	205	226	205	227	0.90
2	15	5.5	1.1e+03	1.9	4.9	1	23	233	255	233	255	0.96
3	15	0.00064	0.13	14.2	0.3	2	23	261	282	260	282	0.97
4	15	0.23	44	6.2	8.5	2	21	567	586	566	589	0.94
5	15	2.6	5.2e+02	2.9	1.0	1	23	655	677	655	677	0.82
6	15	0.88	1.7e+02	4.4	0.0	3	23	896	916	894	916	0.97
7	15	0.0018	0.35	12.8	0.3	1	23	924	946	924	946	0.98
8	15	0.067	13	7.9	1.0	2	23	1048	1069	1047	1069	0.95
9	15	1.4	2.8e+02	3.7	0.8	3	23	1081	1101	1079	1101	0.93
10	15	0.017	3.2	9.8	1.3	1	23	1178	1200	1178	1200	0.96
11	15	0.041	8.1	8.5	0.3	1	23	1271	1293	1271	1293	0.97
12	15	3.1e-05	0.0062	18.4	0.6	1	23	1299	1321	1299	1321	0.97
13	15	0.004	0.78	11.7	2.9	1	23	1387	1409	1387	1409	0.98
14	15	0.00038	0.074	15.0	1.5	1	23	1415	1437	1415	1437	0.99
15	15	1.4	2.8e+02	3.7	0.4	2	23	1524	1545	1523	1545	0.96

Sequence Information

Coding Sequence: ATGTTGCCCGCGGCGGGCAAGGGCGAGAGAAGAAATCTGCGCGGAAGCGCGCGACTCTCGTCCAAGATGTCGGGAAGGCCGCCCCGGTTGCGGGCGCTTCGACCTCGCtcgcagcagcagcagccacGGACGAGGACGGACGCGGACGGGACGCGCAGATCGGAAGGTAACCTTAAAGGTGCCGCCAAGAGTCGCGAGGAGGAGGATCAGCTGGAAGAGAGCGCGAAGAGATGCGACGAggaggagaagaagagagaagacgCGGGGAGGATGACGGATGACGCCGCGAACGAGATGGGCAAcaccgacgacgacgacgacggcgacggcgacggcgATGGCGATGATGATGGCGTCGAGGGGAACGAGGAGGTGACCATGACCATGACGGAAGAGGACAACGACGTCGTTGACGTCGACGTCGACGTCGAGATGAGGTCCGTCGAAGGTGGATCCGAAACGGTCGAGACGATCGCGAACGAGCAGCAGGCCTCGTACGAGTGCAAGAGCTGCAAACCTCCCAAAGAGCTGCCCGACATCAAGGCCTACTTCGAGCATCTCCGAAAGGAGCACAAGTATAAGGGCAAAAACGGGCACAATCCAGTCGAAAATCGTTGCCCTGCGTGTTCGTATGTCACATTGAACGTGAAAGATCTTGAAAATCACCAAAGAGTGCATcatttgaaaagaaaattctttcgaTGCACAAAATGCGATTACATGACGCACATCAGAGCGCGTTACACTAAGCATGTTAAATATCATTCTATGCCGATGATCAAGTGCGATGCTTGCGATTTTAGTTCAGCGTATAAGTGGAATCTAGAAAGACACATGCGGAATCATGGAGGTGGAGGTGCTTTCAAATGTCGTGCTTGTAATTTTACCGCTGATATCCGTCAGAGCTTAACGGTGCACGAGTCGTATCATCACGACCCACCTGTGGGTCACGTCAACCGCAAAAGTAATAACGCTTTCGAACGTAAGCCACGAAATAGTCCGAAACGTTATAATCAGGTTGGAGCGAGTGACTTTCGAGCAGCGTTAAATAAAACTGGAAGCACACCCACGTCGGCCAATTCAACCGATTCGTTCGTATCGGATCATTCGTTAATTTCGATAGACGATAGGAAAAGCGCTCTGGCCAGTGCCGAATGCATCGCATTGAAATGCGAAGAGAAGGGCTGTCAATTTATAACATCCTGGGATTCCGCGATGCAACGTCATTTGGCGGAATGTCACGCGCCGAATACTTCAACCAAGCCTAAGAAACCACTGCCACGATTAATTCCATTAAGTTTAGCTAATTCTAAGCCCAATAATACGATTGGCAATAGCGGGCCGACCACGACTCTGCTGAAAGTTCCACGGGTCAGAGTGAGACCCGAGCTGGCGCAAATTGCGAGAGATACGGAGCTGGCCAAGATGTATGGAAATAAAGAGGTCGTCAATTCAAAGAGGGATCTTAATTCCGCGGCTGGTATATTTGAGAAAAAGAACGCCTCCTTCTTCGATAAACTTAAGGAAAAACTAACGACGACGGCGACGTCGATTAATAATAACGGCGTGCCAGAGGTAGCTGTAAGTAGCGAGAACGATTTGAAATGCTGGTGTACGTTTAAAGCTAGTAGCATGGAAGAGCTAGCTTGCCACAAACAGACACATCACACTGCGCTCAGTGTATCCGTGGGTACGACACGTTGTCCTAAGTGTAGAAGACGTTGCAAGAGTTCGACCGATCTTCAAGTGCACATGCAATGCTGCCATTCGCGCAACGACACGACATCGTCCATCGATAGTAGTGTAGAGAAAATAACAAATTGCTCGGACGTCCGCATGACCTCGTACCGTGGTGAATACGCTTTCCCATCGCAAATGGATTGGGACGCGAATCTCAGAGGACTAAATTCTTCTGGATCCTCGGTTGAAGGTGGTTCGACACATCCGAGCGGGCGGCGGGTATTCAAATGTCCCCATTGTCCATTTTGGGCTTCCACCGCAAGTCGCTTTCACGTTCATATAGTCGGTCATTTAAACCGGAAGCCGTTCGAGTGTTCTATGTGCGCGTATCGTTCAAACTGGCGATGGGACATCACAAAACATATTAAACTTAAAGCGGCTAAAGACGCAGTGCATACGACCGCCAGAGTGCTCATGACGGATGAGACAGGTCGACGGAATTATTccaaatataacaaatatctCGCACAGGTGGAACAACAACCGTGGGACGAGGATCGTATGGAGGAACGTAGCATAGAGGAGACCAACCAAACCTCTGACGGGCCTTTTTCGACAAAGCTGTTAATCGTAGGAAACAAAGAGTACGTTCCGACGATTGATCTCGCATCGCAATCTCCCGTCACGATCTTGCCGTCGAGCGAGGCGAATCAGAACGGTCATAACGTGGACGTGAGTTTGCGACCACCTCCACCGCTCAAAGCGGCAATGAAGAGTCGTGGACAGTCTCTGCTGAAGAACAATCCGATCACGATGCATATACAGACCGCCAGCGGTGGCGGTTCAGTTTCTATATCTACAGCGACCGATGAGAGCAAACGCACTCAGTGGAAGTGTAAACGTTGCAATTATCGAGATTTCAATAAAGACGCCGTCTTATTGCACGTTAAGTCTCATTATGAGTCTGCGGATCAAGAAACCATTGAAGAGAGAAATCCATTTGGTTGTGGGGATTGTCCCTTTTCGGCACCAGACGCTGCGACTCTGTCTCTTCATAGGATGAACCATCGGCCAAACTTGGAAGCTATATTTAAATGCTATCTTTGCCCATACTACGTTAGTACAAAGGCAGAACTGTTGGAGCACATTAGACTTCATGGGGAAGAAATGGCGGCTATTCATCAGCAAAACATAGATATCCGGTCACCAAATTCCAAGGGTAAATTGCAACAAGTGTCAATTTCCGATGTCGGAGTTTCTCGAGCGAAGGACGAAGCATCCATAGAACAAGTGATTCAGATAACGTCGCGCAACAACGTAACGACAACCTCAAAAGCTGCTCCGGCAGGTGTAGTCCCATCGCCGCCGCCTCCACCGTCGCTTCTTTTAGACACTCGAGCTCTTCCGGACGCTCCGCTCGTCTGGGTATCGCGACTAGACGGCACGCTGACGAAGATGCTCAAGTGTCGTCACTGTCCCTACGTCTCGTCGCGACGTGCGGAAGTGCGTGACCACGAGACGATGCACGTAGATACGCCGGCTCAGGGTCCCTTGATCGCCTGTACGGACTGCAGCTTCACCTGTACGCGTCGAGAGATTATGATCGCGCATACGGAGATGCACGCCGGATCTTTGGGCACCGTTCACTGCCTAGTAGACGAGACACGGCCCGATTCTCAACAGGCGAGCGATCTGGCCACTCTACTTGGTCTGACGCATACTCCGATATTGGGCAGTGAACCTGATTTGCACGACTCTCGTTTGGTGCATTGTTGCGGCAAATGCCCGGCGCGATTCCTGTGCGAGAAGGAATTGCGCATCCACCTGCGCTATCATACTACAGAGCTAGCGCACTCGTGTCAATGGTGCTCGTACGCGGCGCGCCAGCCGACGCATCTGCTGGCACATCAAAAGGCACACTCGAGCGAGTATCAAGAACGCACCAAGTATTTGTTGTCTCTGTACGGGCATTCGCAGCGTTATCCACCGCCCGCGACGGCGTGCGTCGAGGCGGCGAATCAGGAGGGTAACAACGGTGGCGTGCCCAACATTGCGTGGATCGTTGTCGAGATCAATGAGAGCGCAAACAGCAACGCCGTGACCATTCAGAGGACTGGAGGGAATCAGGTGTTTACATGCGCTAAATGTCCAGCTCGCTACTTCAAACTGGACGCCTTGGAGTACCACATGACTTTGCATGGTTCGAACAATCGGTTCAAGTGCAATGATTGCGACTACTCGTCAAAAACGGCCCAGAATCTGGTGAAACATCAGGTGGTACATCGACGACACAACGAAATCGGCGGCGAAACGACTACAATGACGCCGATCACCACTGCAACTACCTCCTCCGCAGTTTCTGTTTCCACTCCCATTCTGTCTATGCAACCGGATCCTCAATTCGGTATCTTCATGCGCGGTAATCCCAACTTTGTCTACCAGGGTTACTTGCGAAATGGCCGTTTGAAGGAAAAGCGCTACAAGTGCCACAAGTGTCCGTCCGCTTTCGAGAAGCGCGAGCAGTATAGAGTCCATCAATCGCTACACGGTGCCAAGCAGCGCTATCGCTGCGACACGTGCGACTACTCGGTCAAGTATTACGCGAATtttatacaacatataaaaaagcaTCAGGCAAACGCGGAAGCGCAAGCGTCCCGCAGACAATACGAGGACGATCGGATCTCCCTCGACAGCGACAGCATCGCTGACATAACTGCCGCGTCGACCTCGTCGCGCAAGTCTTCGCGATCGTCCGTCGCCGTTGCGTCTTCCGGTAACAATGTCGCCAACACTTTGCAAACCTCCAATCAAGATAGGCAGAGTCTACTACTGATGCAGAAGAAAGGCATCATCTCCGCAACGGGTGAAGCCGATGCGGAAACGATCCGTTGCCTCAGCTGTCCGTTCTCCACCACTGACAAGGACGTGATGGACGCGCACAAGCGTCGCCACGGCATCGAGCGCATGACTCCGCCGTGTCCGCACTGCGATTACATTCCCCGGAAAGATGAGAACATCGGCGAACACATCAGACTGCACTTTACTAGGCTGTACAAGCCCGAGTCGTATCTCGTCGTCGAGCTGCTGACGCTGATGATGGAAAAGGTACCCAAGGCGAATGGTAAAGAGGAGGAGAAGGGAAGACAGCGGGTGAAGGAGCTCCTGTTCAAGGAATGCGCCGATGGCAGATTCCTGCCGCTCAGCGAGCCGCactcttctcctcttcctctagGTACCTCGACCGTCAACAAGAAGAAGGTCATCGTGGATCCGCACACGGGCGAAACTAAGCATAATCTCGCCGCGTAA
Protein Sequence: MLPAAGKGERRNLRGSARLSSKMSGRPPRLRALRPRSQQQQPRTRTDADGTRRSEGNLKGAAKSREEEDQLEESAKRCDEEEKKREDAGRMTDDAANEMGNTDDDDDGDGDGDGDDDGVEGNEEVTMTMTEEDNDVVDVDVDVEMRSVEGGSETVETIANEQQASYECKSCKPPKELPDIKAYFEHLRKEHKYKGKNGHNPVENRCPACSYVTLNVKDLENHQRVHHLKRKFFRCTKCDYMTHIRARYTKHVKYHSMPMIKCDACDFSSAYKWNLERHMRNHGGGGAFKCRACNFTADIRQSLTVHESYHHDPPVGHVNRKSNNAFERKPRNSPKRYNQVGASDFRAALNKTGSTPTSANSTDSFVSDHSLISIDDRKSALASAECIALKCEEKGCQFITSWDSAMQRHLAECHAPNTSTKPKKPLPRLIPLSLANSKPNNTIGNSGPTTTLLKVPRVRVRPELAQIARDTELAKMYGNKEVVNSKRDLNSAAGIFEKKNASFFDKLKEKLTTTATSINNNGVPEVAVSSENDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKSSTDLQVHMQCCHSRNDTTSSIDSSVEKITNCSDVRMTSYRGEYAFPSQMDWDANLRGLNSSGSSVEGGSTHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSMCAYRSNWRWDITKHIKLKAAKDAVHTTARVLMTDETGRRNYSKYNKYLAQVEQQPWDEDRMEERSIEETNQTSDGPFSTKLLIVGNKEYVPTIDLASQSPVTILPSSEANQNGHNVDVSLRPPPPLKAAMKSRGQSLLKNNPITMHIQTASGGGSVSISTATDESKRTQWKCKRCNYRDFNKDAVLLHVKSHYESADQETIEERNPFGCGDCPFSAPDAATLSLHRMNHRPNLEAIFKCYLCPYYVSTKAELLEHIRLHGEEMAAIHQQNIDIRSPNSKGKLQQVSISDVGVSRAKDEASIEQVIQITSRNNVTTTSKAAPAGVVPSPPPPPSLLLDTRALPDAPLVWVSRLDGTLTKMLKCRHCPYVSSRRAEVRDHETMHVDTPAQGPLIACTDCSFTCTRREIMIAHTEMHAGSLGTVHCLVDETRPDSQQASDLATLLGLTHTPILGSEPDLHDSRLVHCCGKCPARFLCEKELRIHLRYHTTELAHSCQWCSYAARQPTHLLAHQKAHSSEYQERTKYLLSLYGHSQRYPPPATACVEAANQEGNNGGVPNIAWIVVEINESANSNAVTIQRTGGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCNDCDYSSKTAQNLVKHQVVHRRHNEIGGETTTMTPITTATTSSAVSVSTPILSMQPDPQFGIFMRGNPNFVYQGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHQSLHGAKQRYRCDTCDYSVKYYANFIQHIKKHQANAEAQASRRQYEDDRISLDSDSIADITAASTSSRKSSRSSVAVASSGNNVANTLQTSNQDRQSLLLMQKKGIISATGEADAETIRCLSCPFSTTDKDVMDAHKRRHGIERMTPPCPHCDYIPRKDENIGEHIRLHFTRLYKPESYLVVELLTLMMEKVPKANGKEEEKGRQRVKELLFKECADGRFLPLSEPHSSPLPLGTSTVNKKKVIVDPHTGETKHNLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00127818;
90% Identity: -
80% Identity: -