Basic Information

Insect: Prenolepis imparis
Gene Symbol: -
Assembly: GCA_030444845.1
Location: JAUDTA010000005.1:8498993-8501959[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.3e-06 0.00025 22.7 1.3 1 23 301 323 301 323 0.98

2 11 7.8e-05 0.015 17.1 1.2 1 23 335 358 335 358 0.95

3 11 0.001 0.2 13.6 2.7 1 23 402 424 402 424 0.98

4 11 6.8e-07 0.00013 23.6 1.5 2 23 479 500 478 500 0.97

5 11 8.6e-05 0.017 17.0 1.1 1 23 505 528 505 528 0.95

6 11 0.00012 0.024 16.5 0.2 1 23 566 588 566 588 0.97

7 11 1.2e-06 0.00023 22.9 1.7 1 23 598 620 598 620 0.96

8 11 5.7e-06 0.0011 20.7 1.8 1 23 626 648 626 648 0.99

9 11 1.3e-05 0.0026 19.5 0.2 1 23 654 676 654 676 0.98

10 11 0.00022 0.043 15.7 3.4 1 23 682 704 682 704 0.98

11 11 0.00032 0.064 15.2 0.4 1 21 710 730 710 731 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.3e-06	0.00025	22.7	1.3	1	23	301	323	301	323	0.98
2	11	7.8e-05	0.015	17.1	1.2	1	23	335	358	335	358	0.95
3	11	0.001	0.2	13.6	2.7	1	23	402	424	402	424	0.98
4	11	6.8e-07	0.00013	23.6	1.5	2	23	479	500	478	500	0.97
5	11	8.6e-05	0.017	17.0	1.1	1	23	505	528	505	528	0.95
6	11	0.00012	0.024	16.5	0.2	1	23	566	588	566	588	0.97
7	11	1.2e-06	0.00023	22.9	1.7	1	23	598	620	598	620	0.96
8	11	5.7e-06	0.0011	20.7	1.8	1	23	626	648	626	648	0.99
9	11	1.3e-05	0.0026	19.5	0.2	1	23	654	676	654	676	0.98
10	11	0.00022	0.043	15.7	3.4	1	23	682	704	682	704	0.98
11	11	0.00032	0.064	15.2	0.4	1	21	710	730	710	731	0.95

Sequence Information

Coding Sequence: ATGGCAATTTCGAACGATGACGTGATAATGAATAACATGGCTCACGCGGAGCGAATCGTGGGCGACGAGTGCCGGATCTGCCTCAAGTCCTGCACGGAGACCTGTCAGCTCTTCCGCAACTCCGGAATGCCGGAAAAGCTGATGGCTATCGCCGCCGTGCAGGTGGATGAGGGAGATGGTCTTCCAGCTTGTATTTGTTTATCTTGCAACCATCTCCTCAACATGTCCTACGACTTTAAGTGCCAGATTCAAGAGGCCGATATGAAACTACGTCATATCCTGAAGTCGCAGATTCGGCCTATGTTGCACGACAAACACGCGAAGGATGATACAACAATGGtgaaacatataattacaaatcTATCTGATGTAGTCTCTTGTGATAAAGATAATCATGTTATGGGACAGAAAATCTATACACACCATGATATTGTTACATTCGATAGCACCACTATTCAATCTGATGCGATAATTAATCACGAATCTTGCATGCATAACGAATTTCTGCAGAAGACGGAGGAAATTACAGAGTCAAATGGAAAAGATGCGCAGTACGATATGCTCAAAGAGAGTGTACATGACACTGAAATAGCCTTATGTCACGAAGCTCACATGGACGATTCGCTTACTGATCAGTCGAATCGATTGTCTGATTCGACAATGGACGACAGATGCATCAAGCAggaacaattaatattatctgaGGAGACCCCGGGAAGTTTAACGAATGAAAATAGAGGAGACAGATTGAAGATCGAAGTTAAGAACGATGTGTCGTTGgaagattttaataatcacGTTTCGAAGGAGATGTTAGAAACGGACAATCAAGATATGAAAAGCATTATGAACTGTAGCGATGATGAAGAAAAGCCATTGATAAATAGGACAACCAGACATTATAGATGTTCGCTTTGCTTGAGATCGTTTTCGACGAAAGTATCGTTACAGCGACATATGCTCGTGCACAAACACAAACATAAGCACAAGACGAAACTGCGTTATGTGTGTCATGTATGTGACAAGCAATTCTCGAGCATTGCCAAGTTGAAGAGCCATGTGCTTAACACTCATGAAAGTCATACGGTGGATGATGAAAAGACGCAAGTAGCTAATGaagataaaaaagttaaaacatCGGCAAAAGTTACTAGAAGTGGCAACGTGTTGGACGGTACGAGAGAGGAGAagaaaaactttaaatttacatGCAAAGTTTGCTCAAAGCAATTCATATATCAAAAGTCCTTTCTATCTCACGCCAAAAGTCATCCTGAATACAATGAGGAGATTTCGGGTGACGTATTCGATCAGTGTGCAAATAAGACAACGAGCGAGCAGAAGGAGAGGACACCAACGTTCAGAGAAAATGAAtccgaggaggaagaggaagaagaggacgacgacgacagcgaccTACCGATCGAAAGTCTACAATGCACGCAGTGCGGTAAGCTCTTTGCCACAAAGAGGAACCTGAAGAGGCACATCTCGACGCATAGCGGCTTGAAATTCAATTGCTCGACCTGTGGGAAAGGATTCTCAAGGATTGACAAGCTGAAGGATCACGAACAATCGAAGCATAAGGAGGAAATATTCGGCAACACTGACGACGAGgatgatgacgatgaggaTAATGAGAACAAAGTCAACGAAAATTCCGAGAGTCGGAAGAAGGACCGACACAACAGGCCGCACAAATGTGCACTCTGTCCGAAGGCGTTCGCGCAGGCTCAGTCTCTGGCGAACCATGTGGAAAGGCACAAGCGAGTGAAGGACACGCAGAAGCGATTTCTCTGCGAGAAATGCAGCAAGTGCTTTGCCCAAAGCGGCTCGCTGGTGGCGCATATGCGCACGCACACCGGCATCAAGCCGTACGTGTGCAACACGTGCAGCCGCGCTTTCACCAAAAGCACCTACTTGCAGCTGCACTTGAGGACCCACAGCGGCGAGAAGCCGTACATCTGCCAATACTGTAGCAGAGCGTTCGCTCGAGCCAATACTCTGGCGCGACACATCACCATGCACACCGGCGAAGCCAAGTATCATTGCAACGTCTGCGCCAAGTCCTTCCGACGACTGACCTCGCTGAACGAGCACACGTACACGCATACCGGTCAGCGACCGTACGTGTGCAAGCTCTGCACCAAAAGCTACAACAATGCTGGATCGTTGTACGCCCATACGAAGAAGTGCAAAGCGCAGCAGTTGTCCAATTCGACGACGACCACGTTCGCGGTCTCCGTGCCGGACAACACGGCGCAGCAGAACGACGCGCCTATGCCTCAACTGCTGATCTACTCCCAGAGAAAGCTGGTGGAGGAAGCGACGGTAGGTCAAGTCGTATCTACGCCGCAATACATGGTGGCGAATGTGCACAATCAGAAAACTGTGCCCGCCAACGTGATTCAGCCGTTCGCTGTGGAGGATCCAAGTGTGTACAATTCGAAACAGTTCAAGAACCCATATTACGCTATTTATCCGAACATGTAA
Protein Sequence: MAISNDDVIMNNMAHAERIVGDECRICLKSCTETCQLFRNSGMPEKLMAIAAVQVDEGDGLPACICLSCNHLLNMSYDFKCQIQEADMKLRHILKSQIRPMLHDKHAKDDTTMVKHIITNLSDVVSCDKDNHVMGQKIYTHHDIVTFDSTTIQSDAIINHESCMHNEFLQKTEEITESNGKDAQYDMLKESVHDTEIALCHEAHMDDSLTDQSNRLSDSTMDDRCIKQEQLILSEETPGSLTNENRGDRLKIEVKNDVSLEDFNNHVSKEMLETDNQDMKSIMNCSDDEEKPLINRTTRHYRCSLCLRSFSTKVSLQRHMLVHKHKHKHKTKLRYVCHVCDKQFSSIAKLKSHVLNTHESHTVDDEKTQVANEDKKVKTSAKVTRSGNVLDGTREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHPEYNEEISGDVFDQCANKTTSEQKERTPTFRENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDDDDEDNENKVNENSESRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNVCAKSFRRLTSLNEHTYTHTGQRPYVCKLCTKSYNNAGSLYAHTKKCKAQQLSNSTTTTFAVSVPDNTAQQNDAPMPQLLIYSQRKLVEEATVGQVVSTPQYMVANVHNQKTVPANVIQPFAVEDPSVYNSKQFKNPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00109993;
90% Identity: iTF_00869066;
80% Identity: -