Pimp012957.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prenolepis imparis
Gene Symbol
-
Assembly
GCA_030444845.1
Location
JAUDTA010000005.1:5728022-5734955[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.0013 0.26 13.2 0.7 2 23 21 42 20 42 0.97
2 35 0.11 21 7.2 3.3 1 23 47 70 47 70 0.97
3 35 8.6e-07 0.00017 23.3 1.7 1 23 105 128 105 128 0.97
4 35 1.2e-05 0.0024 19.7 1.1 2 23 135 157 134 157 0.94
5 35 2.8e-05 0.0055 18.5 0.4 1 23 162 184 162 184 0.97
6 35 2.4e-07 4.7e-05 25.0 0.8 1 23 190 212 190 212 0.98
7 35 1.9e-05 0.0036 19.1 3.1 1 23 218 240 218 240 0.98
8 35 8.2e-05 0.016 17.0 0.6 1 23 246 268 246 268 0.98
9 35 0.0021 0.41 12.6 1.1 1 23 349 371 349 371 0.98
10 35 0.017 3.4 9.7 1.5 1 23 373 396 373 396 0.94
11 35 0.00045 0.087 14.7 2.5 1 23 401 424 401 424 0.97
12 35 0.014 2.8 10.0 1.6 3 23 432 453 431 453 0.96
13 35 0.037 7.2 8.7 1.1 3 23 460 481 458 481 0.92
14 35 1.8 3.6e+02 3.4 1.6 1 23 486 509 486 509 0.79
15 35 0.0054 1.1 11.3 8.2 1 23 519 542 519 542 0.95
16 35 6.3e-06 0.0012 20.6 0.6 1 23 548 570 548 570 0.99
17 35 2.5e-06 0.0005 21.8 0.5 1 23 575 597 575 597 0.99
18 35 1.6 3.1e+02 3.6 4.7 2 23 681 702 680 702 0.96
19 35 0.00012 0.024 16.5 1.3 1 23 704 727 704 727 0.96
20 35 0.0019 0.37 12.8 1.5 1 23 732 755 732 755 0.97
21 35 8.8e-05 0.017 17.0 2.1 1 23 761 784 761 784 0.96
22 35 0.0023 0.44 12.5 2.0 2 23 791 813 790 813 0.95
23 35 0.0032 0.63 12.0 0.2 1 23 818 840 818 840 0.97
24 35 0.0013 0.26 13.3 0.5 3 23 848 867 847 867 0.98
25 35 1.2e-05 0.0023 19.7 0.1 1 23 873 895 873 895 0.97
26 35 0.0018 0.36 12.8 0.4 1 23 901 923 901 923 0.97
27 35 5.5e-05 0.011 17.6 0.5 2 23 1023 1044 1022 1044 0.96
28 35 8.6e-05 0.017 17.0 1.9 1 23 1046 1069 1046 1069 0.97
29 35 0.065 13 7.9 3.5 1 23 1074 1097 1074 1097 0.95
30 35 6.9e-05 0.013 17.3 1.9 1 23 1103 1126 1103 1126 0.96
31 35 0.013 2.5 10.1 1.0 3 23 1134 1155 1132 1155 0.95
32 35 4.6e-05 0.009 17.8 0.3 1 23 1160 1182 1160 1182 0.97
33 35 1.6e-05 0.0031 19.3 0.1 3 23 1190 1210 1188 1210 0.97
34 35 8.4e-06 0.0017 20.2 0.1 1 23 1216 1238 1216 1238 0.98
35 35 0.0011 0.21 13.6 0.8 1 23 1244 1266 1244 1266 0.97

Sequence Information

Coding Sequence
ATGTTGTGGCAGAAGAAAGAACCTATGCAGATCAGACAAAGGCTGAGCGGGAACGTTTGGACCTGTAACGTGTGCTCTAAAAACTTCGTTAAGATCTTGCAATTGAGAGAGCATATGAAATATCATGTGGAAAACTTTTACTATTGCGGACGCTGCAAGATTACCTTCCAGTGTCCAAAGAAATTACAGAAACATATGGATACGGTGCACACTTCCAGAAAGGCATACATCTGCAACAGATGCAACATCGACTGCAAATGCAAGCAGTCGTTGGACGACCACTATTTGAGGAAGCACACGCATGATCGGAATTACGTGTGCAATACGTGCGACAAGTCCTTCAAAGTGAAGAGCAATTTGTACATGCACATGAAATATATTCACGGTGATGGTCGCGAGGTGACCTGCGACGTCTGTGACAAAACTTATCGGACCTCGTTCGCGCTGAAGAAGCACATGAGTCAACGTCACAGCGATCGTAAATTCCCTTGCCAGGTGTGCGGGAAGAAGCTCGCGACCAAGGAATCGCTGGAGCGACATACCAAGCTGCACGATCGTCGGAAAAGCTTTATGTGCGAGATATGTGACAAGAGCTTCAAACGCAGCGACACCCTGGATAAGCACATAAAGATCCATTTCGATGTTAAGCCGTTTAGCTGCAAGATCTGCGACAGGTCGTTCAGGAGTAATAACACGTACAAGCAGCATCTGCTGAGGCACACCCGCGTCAAGCCGTACGTCTGCGACGTGTGTCGTGAGAAATTCAGGCAGAAAGCGGGACTCTTGGTGCATCGGAAGAAACATCCTGGACCGCTACCTCCGCTTCCCACTATATCGATAGATCACATCATCCAGCATCTGATGAAAAAGTTTACTGATTTACTAGAACTCGATGAAATCAAGATCGATGCAATCAAGATCGAAGGAAGCCTTCGGGAAGCGAACGCGTTGTTTATGGCAACATCTATGAACGCTGCGAATGAGATAAACAGCGTAGAGAACAGTAAAGAAAATAAGGATGTAGGAAGTTCATCGTATGATCATTATTCGTGCAGTATTTGCGCCTTCCCGTGCCAAACGAAAGGGAGTTTGATAAGACACATGCAGCTTCACGAGCATACATGTAGCATCTGCAACGGGCTGTTTGAATCGTCGAAAAAGCTACAGAGTCACATGGCCCTAAAGCACGGCGAGGCCAAGTACGTGTGCAAATTGTGCAACACCACGTTTTGGAGTAAGTCGGACTTGAGGAAACACTTTATGACCAAGCACTTGGATCCCTTCTGCAACATCTGCAACATTTGTAATCAGGAATTTCAGACGATGTACGCCATTACGAGACATATGCATCGCTCGCACAGCACTGTCTCTATAATTTGTACTCTCTGCAAACGGGAATTCGGTAACTCTACAGCGTTGAGGATGCACAACAAACACGTTCACTTGAAGGCGGGATTCCAGTGCGGGATCTGCGGGAGACGGGATATCTTCAGTGTGGTCGAATTAGAAACCCATTTACGCCGACACAGAGATAAGCAACGTGTGTCGAGCCAGCACATTTGTACAACGTGCGGACAGTGTTTCGATAAGAAACCACATTTGACGGAACACATGATCAAATGTCACGGCAAGACTAATCCTTACGTATGTCCGGTTTGCAAAAAGAGTTTCGAAAAACGTTCAAATCAGATACAACATATTCTCACGCACATGCATAACTTATATACGTGCGACATTTGCGGAGCGAAATTTCCGCGAAGGTCTACTTTAATAAGTCATAGGAAAATGCATCCTGGACCGCTCGGGCCGTTGCCGATTATACCTGTGACAGGTCTTGTGAGCAAAGTGGTGGATCCGTTAAATGTTGAATCCATTGTCATCCAAAAACCATTGGAATGCGAACAAACGAGAAGAGAAAAGTCTTTAATAGAAGACGAAGAACGAACGCTAGAAGGGATGAACGTAGACTTGACAAGGGAACCTAGTTCGCGAATTGAAACCGAAGGGAATCGGTCGACCAGAAGAAAGCCGACGTGCGTAGAGTGCGATCACTGTTGCCGCAAATTCCTAAAGAAAAGCAATCTCGCCGAGCACTTGAAGCAGCACAGACACAAGTGCGCCGATTGCCCGAAGACTTTCAGCCTTCAGCGTTACTTGGTCTCCCACATCGAGAGGAATCATCGACAGCAGATGTACGAGTGCAGCGTGTGCAAGTACAAGAGCAACAACAAGGGCACCCTGAAGAATCACTACATCCGCTTGCACACGAGCAACTACGATTACTCGTGCGACATCTGCGGCAAGCAATTCAAGATCAAGAAAGCCCTGAATCACCACGTGAAGCAGAATCACAGCGAAGCACCGCCGATCGTGTGTGACGTCTGCGGTCATTTCAGCAAGAATCTCCATGCCCTCAAAGCGCATATGAAGTACAGACACTACAAGCCGGAATTCGTCTGCCGGATATGTCGACGGGGTATGACCACGCAGGAGAACCTGGAGCAGCATCTCATGTGGCACGAAACCAGGGAGAAAGTGCTCTGTCCGACTTGCGGCAAGAGATTCCGAGGACGCGACCTTGACTCGCACATGAGGGTGCACACTGGAGTAAAGCCGTTCCCCTGTCCTGTCTGCGGAAAGACGTTTCGACGACAAACAGCGCAGGAGCAACATGTGTTGATCCACACCGGGAAGAGACCCTACATTTGCGATATTTGCGGCCAAGCGTTTGCCCAAAAGCCCGGTCTCATCTGCCACAGGAAGAGACATCCTGGTCCTCTGCCTCCGCTACCTGTAGTCtccattaaaaatattgtcacGGAATTTACGAAAGACGATTCACGTCTGGACCCCCTGAACGTCGTGGACATCAATATTTCGGAACACTCGCCCATTGAAAGTATAGAGTGCACGCCCGAGTATGATTCGCTACCAAATAGGCTCAAACGACACATTACCAGAAAAAGAAAGGTGTCGAAACAGGAGAATGATTGTACGaagaaagatacgaaaaagCAAAATACAAATCAGAATAAAATCGATAGGAGGAAACCCGAACTCTTCCTGGAATGCGCCACGTGTGGCAAACGTTTCGGCGACAAATCTACCATGATAAAACACATGAGCCAGCACAAGTACCAGTGCCAAACCTGTTACCAGAGTTTTAGCTTGAAGCGAGACCTGAAGCGTCACATCGAGAAGATCCACGGACCTTTACTCTATCCCTGCAGCATTTGCGAGTACAAGAGCAGTAATAAATGCACTCTGAAGGATCACTTTATACGGAAACACACCAGCATCTTCCAATATTCCTGCACGGTTTGCAAGAAGCAGTTCAAGATCAAGAATGATCTGAAGCAACATATGAATCAAGTACATAGTGGCGAACCGCCCGTCATTTGTAGCATCTGCGGACACGCGTGTAAAAACCTGCCTGCCATCAAGGCGCACATGAAGTACCGACACTACAAGCCGGCTTACGAGTGCAAGATATGCAAACGAGGTCTGACCACGCAAGAGAATTTGAACCAGCATCTGATCTGGCACGAACGGAAGGAGAAGGTCATCTGTCCCACTTGCGGCAAGACCTTTGGCCAGAAGAGGGACTTGGATCTTCACTTGAGGATCCATCAGGGTATCCGACCGTTCTCCTGTCCAGTCTGCGGCAAGACTTTTCCCAGAAAGACCGCGCAAGAACAGCACATATTGATTCACACCGGCAAGAGACCGTATATCTGCGACATTTGCGGGCAAACTTTCGCGCAAAAGCCGGGACTCATTTGTCATAGGAAGCGTCATCCTGGACCACTGCCGCCGTTACCTGTAGTaccgattaaaaaaataattatggaCTTTACGAAAGAACTGGGAGTTTCACAAGAAAATACATTTACAAGATAA
Protein Sequence
MLWQKKEPMQIRQRLSGNVWTCNVCSKNFVKILQLREHMKYHVENFYYCGRCKITFQCPKKLQKHMDTVHTSRKAYICNRCNIDCKCKQSLDDHYLRKHTHDRNYVCNTCDKSFKVKSNLYMHMKYIHGDGREVTCDVCDKTYRTSFALKKHMSQRHSDRKFPCQVCGKKLATKESLERHTKLHDRRKSFMCEICDKSFKRSDTLDKHIKIHFDVKPFSCKICDRSFRSNNTYKQHLLRHTRVKPYVCDVCREKFRQKAGLLVHRKKHPGPLPPLPTISIDHIIQHLMKKFTDLLELDEIKIDAIKIEGSLREANALFMATSMNAANEINSVENSKENKDVGSSSYDHYSCSICAFPCQTKGSLIRHMQLHEHTCSICNGLFESSKKLQSHMALKHGEAKYVCKLCNTTFWSKSDLRKHFMTKHLDPFCNICNICNQEFQTMYAITRHMHRSHSTVSIICTLCKREFGNSTALRMHNKHVHLKAGFQCGICGRRDIFSVVELETHLRRHRDKQRVSSQHICTTCGQCFDKKPHLTEHMIKCHGKTNPYVCPVCKKSFEKRSNQIQHILTHMHNLYTCDICGAKFPRRSTLISHRKMHPGPLGPLPIIPVTGLVSKVVDPLNVESIVIQKPLECEQTRREKSLIEDEERTLEGMNVDLTREPSSRIETEGNRSTRRKPTCVECDHCCRKFLKKSNLAEHLKQHRHKCADCPKTFSLQRYLVSHIERNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYSCDICGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDDSRLDPLNVVDINISEHSPIESIECTPEYDSLPNRLKRHITRKRKVSKQENDCTKKDTKKQNTNQNKIDRRKPELFLECATCGKRFGDKSTMIKHMSQHKYQCQTCYQSFSLKRDLKRHIEKIHGPLLYPCSICEYKSSNKCTLKDHFIRKHTSIFQYSCTVCKKQFKIKNDLKQHMNQVHSGEPPVICSICGHACKNLPAIKAHMKYRHYKPAYECKICKRGLTTQENLNQHLIWHERKEKVICPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKRPYICDICGQTFAQKPGLICHRKRHPGPLPPLPVVPIKKIIMDFTKELGVSQENTFTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-