Pimp001824.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- SMARCC2
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000001.1:17359405-17364091[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-14 2.8e-11 44.8 0.2 3 44 636 677 634 679 0.95
Sequence Information
- Coding Sequence
- ATGCTGTCGCTAGGGCCGAAAAAGGACGGCGGACCCAACGCCAAATTCTTCGAGGCGCCGGAAATTCTTACCCAGCTCGACGGTGTCAAGCAGTGGCTTCTCAAGAATAGCAAAAAGTATGTGCAAACGGATCCACCCACCAATAAGAGTTTAGCCACGTTGGTGGTACAGCTTCTGCAATTCCAGGAGGATAATCtaggaaaaaatgtatcaaagcCACCTATGACTAGGCTTCCAatGAAATGTTTCTTAGATTTCAAATCTGGTGGTGGTGTATGTCACATATTATCAACCGCTTATCGTTTCAAACAGGAGCAAGGATGGAGGCGATTCGATTTTCCTGTtggaaaaTCGGGATCACGTATGGACCGTATAGTAGATATGCTGATAGCAGCGGAACGTGTTTTAGTACAGAATAGATGTATGACTGTACCAAGTGTTTTCGTGAGACCGGATGTTGATAAAAACACAGCTGCAAAAGTTAAGGAAGTAGTTAGAAAGCATCAAGGAACCGTCGTTGAAAATGAAGCAGATGctacacatattatttatccTCCAGTGGATCCAATGGAAGAAGAATATGCACGTCCTTGTATGAGACGTGAGAGATCGGTTTTAATTCATTGGTACTATTTTCCAGACAGCTATGATTCATGGTTGACAGTGGATCTTCCATGGGACTATCCTGAAGGAACTTAcacaaatacaaattcaagATCAGTATATAAAGTATCAGCTACATGGGCGTTAGATTTGGATCAATATAACGAGTGGATGAACGAGGAAGATTATGAGGTGGATGATAATGGTCAAAAGAGAGTACACAAGTACAGACTATCCGTGGAAGATTTGATGGCACAGCCGTCTCATCCACCACCCGCAAAGAAACCGAAGAGAAAACGATCACCCAGCCCACCCCCAAAGCTCGGAAAACGTAAAAGTAGCAGAGCACCATCGGGTATTCAAAGCGCATCCGCATCATCAGCAACAGCTCCGAAGAAATCACGTGGCGgcgaggaagaggaagatCTAACTCAGGGAATGGAGGATCCACCTGCCGAACCCCGCATCGTCGAAGTGGTTGCTACACCTACAAATCCACCGATTACGGGTCAGAGTAACTCAACAACAGGAAATTCCACTTTGGCATCTACTGGTAGTAAAAAGCAAGATAGCGAGCTTCAACCTCTCAAATCCGGCAATTTGACCGACCTTGATGAACAAATGGAaggGGATAAAGGTAGTTCTCAAGGTGGCCAAGAcagagaggagagagataCTAGTAAAGAAAGAGGTGAAGGTGGTAAAGACGAACCGGAAGATAATGTGACAGAGCAAACGCATCACATTGTTGTTCCTAGTTACTCTGCCTGGTTCGATTATAATTCTATTCACACTATCGAGAAGAGAGCTCtatcagaattttttaatggtAAAAACAAATCCAAAACTCCGGAAATCTATCTGGCATATAGGAATTTTATGATTGATACCTATCGACTAAATCCAACGGAATATATTACATCGACCGCTTGCAGACGAAATTTGGCCGGAGATGTATGCGCGATTATGCGTGTGCACGCATTCTTGGAGCAATGGGGACTAATCAATTATCAGGTAGACGCGGAATCCAGACCGACACCCATGGGACCTCCGCCGACGTCGCACTTCCATGTTCTGTCAGATACGCCGTCTGGTCTGGCGCCAGTTAATCCAAATCCGCCGAAAACGCCACAGCCATCCGCCGCGAAGATGTTGCTCGATTTGGAGAAAAAACCCGCAGTTATATCAGGTCCGGAGGAGAAGGTTGCGGCGGGCGCGATGGCAAATTTTGGTCTAAAGATCGATCAATATTCGAAAAAGCCGGCGGTCCTGAAGAATAAGCAAGCGGCTGGCGCTACGCGCGATTGGACAGAGCAagagacgctcctgctattgGAGGGATTGGAATTGCACAAGGATGACTGGAACAAAGTATGCGAACACGTGGGCTCGAGAACACAGGACGAGTGTATCTTGCACTTTTTACGTCTACCTATAGAGGACCCATATCTGGAGGAAGGTGGACCCGAAGGATTAGGACCTTTGGCTTACCAACCGGTACCTTTTTCGAAAGCTGGTAACCCTGTTATGAGCACGGTCGCTTTTCTCGCATCAGTAGTGGATCCTAGGGTAGCAGCTAGCGCGGCGAAGGCTGCCATGGAGGAGTTTGCTGCGATAAAGGACCAAGTGCCGGCCGCGTTGTTGGATCAGCATTTAAGAAACGTTCAAGCAAGCGCTAATTCGGacggtAAATTTGATCCAGCGGCGGGCTTGGCACAATCGGGTATCGCCGGCACAGGACCGCCCGAACCACCTGACGACACAACGGCATCTGCCGCGACTCCCACGACTGGTGCAGCTAGTTCGCCTCACTCGACGGTGCCAACTCCCGAAGCAAAGAAGGAGGAACCGGAGAAACCTAAAGACGCAATGGACGTTGAACCATCGCAGGTGGACGTCACGAAGAAGGAAGACGAATCGAAGGAGGGTGAAGAAGATGCAAAATCTACCACTGATCCAGAGGCTGCGGAAGCAAAGGAAAAGAAGGATAAGGTTGTAAGAGATGCTCAGCTTCAATCCGCGGCAGCAGCAGCGTTGGCGGCTGCAGCTGTTAAAGCTAAACATTTAGCGGCTGTGGAGGAACGCAAAATAAAATCACTCGTCGCATTGCTGGTTGAAACGCAAATGAAGAAACTAGAGATCAAATTACGTCACTTTGAGGAATTGGAAACTACGATGGAACGCGAACGTGAGGGTCTTGAGTATCAGCGGCAGCAGCTCATCACCGAGCGGCAGCAGTTCCATTTGGAGCAGTTGAAGGCGGCCGAGTTCAGAGCGCGGCAGCAGGCTCATCAACGAATGGCTCAggagcaacagcagcagcagcagcaacagcagaaTCAACAGCATCCACCCTGGCAACCGCCTGGCGCgcaacagcagcaacagcaaccGCCGAGTCCGCAGGCTCAGGCACAACAGCCGCCGCCACATACACCGCCGCAGCAGACATAA
- Protein Sequence
- MLSLGPKKDGGPNAKFFEAPEILTQLDGVKQWLLKNSKKYVQTDPPTNKSLATLVVQLLQFQEDNLGKNVSKPPMTRLPMKCFLDFKSGGGVCHILSTAYRFKQEQGWRRFDFPVGKSGSRMDRIVDMLIAAERVLVQNRCMTVPSVFVRPDVDKNTAAKVKEVVRKHQGTVVENEADATHIIYPPVDPMEEEYARPCMRRERSVLIHWYYFPDSYDSWLTVDLPWDYPEGTYTNTNSRSVYKVSATWALDLDQYNEWMNEEDYEVDDNGQKRVHKYRLSVEDLMAQPSHPPPAKKPKRKRSPSPPPKLGKRKSSRAPSGIQSASASSATAPKKSRGGEEEEDLTQGMEDPPAEPRIVEVVATPTNPPITGQSNSTTGNSTLASTGSKKQDSELQPLKSGNLTDLDEQMEGDKGSSQGGQDREERDTSKERGEGGKDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKMLLDLEKKPAVISGPEEKVAAGAMANFGLKIDQYSKKPAVLKNKQAAGATRDWTEQETLLLLEGLELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANSDGKFDPAAGLAQSGIAGTGPPEPPDDTTASAATPTTGAASSPHSTVPTPEAKKEEPEKPKDAMDVEPSQVDVTKKEDESKEGEEDAKSTTDPEAAEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRMAQEQQQQQQQQQNQQHPPWQPPGAQQQQQQPPSPQAQAQQPPPHTPPQQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473111;
- 90% Identity
- iTF_00867330;
- 80% Identity
- -