Pimp037056.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- clz9
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000016.1:613841-616461[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-09 1e-05 26.6 0.0 2 35 29 61 28 66 0.91
Sequence Information
- Coding Sequence
- ATGGAGACTTTGGACTCTTCGAAGGTAGCTAATTTATCTCAGAATGCATCGAAAAGGAAGAAAAAATCTGCTGCAAGGTACACAGATGCTATTCTGAAGGAGGCCTTAGACGCAGTAAAGAAAGGGATGCCTGTCAGCACTGCATCAAAGCAGTACAATATTCCAAGAACTACGTTGCAGTACAAAAACTGGGGCAAATCGCCACCTGTTATTAAAAGTCGAGGACCTGAGTGTATACTTGGAGAAGAATACGAACGCCAACTCGTACAGTGGATTTTTTATATGAGTCAAAATGGATTTCCTGTGTCACGGGTTCAACTATTAGATAGCGTTCAACTGCTGCTGAAGCAGAtaaagacgacgacgacattTCCAGATAATCGTCCTGGGAGACATTGGTATGATGCCTTTCGTGCTCGTCACAAAAATGTAACTCAACGAATGTCTCAGAATTTGACGCACAGTCGAGCTAAAGTAACGGAAGATAAGCTACGAGCGTGGTTCAACGAGGTGCGGATATATTTTGAATCGAAGTCGCTCCTTGATATTGATCCTTCTCGTGTATTCAATTGTGATGAGTCAGCATTCTTCCTGAGTCCGAAAGGAAGCAAAGCATTAGTCAAGAAAGGTGACAAAACggtttacaattttataaataacgaTGAAAAGGAATGCTTGACTACGCTTATCTGTGGAAGTGCGAGCGGAAAAATTGCATCACCGATGGTAATTTTCTCATATAAGCGAATCCCCGGACACATCGCCAGAAGCATGCCAAAAGACTGGAGCATCGGACACTCTGAGAATGGATGGATGACTGGAGAAACGTTTTACGAGTACatcgcaaatattttttacccGTGGTTGGTGAAAAATGCTATCATGTTCCCAGTCGTGCTATTCTTAGACGGACACAGTTCGCATTTAACAATGGCGTTAAGCAATTTttgcagagagaaagaaatagagcTCATTGCTCTGTACCCAAATGCGACGCACATACTGCAACCGTTAGACGTAGCATTTTTTCATCCTCTGAAGACAGCATGGGCGAAGGTAGTGGGTCAATGGAGACTCGAGAATAACGGCGAACGTATAAAACGAGAAAATTTCGCACAGCTCTTGCAGAAAGCCCTCGATATGTTGGACGTGAAAACAATTCTGAAAAACGGATTTGAAAAGACTGGGCTCCACCCTTTTTCGGCGGACGGAATTAATtatcagaaatatttcaaaaattcagTAGACTACGCAACTCCTCAAACTACTCCGAGCGAAAGAATTCGAACAGAGCTCGAAGATTACTTAGCGTTTATAGAGAATAATATCGAGAAGGAGGTCTTACAAATATTCAAGGACGTCGAAGAGGATGCTGAGTGGACGGGCGAACCGACACACAAAAGCCTCTTTTGTTTCTGGCGAAAGATTAAGAGTAAGATGAACTCCAGCGAAGCCAGTCATAGTATCTCCGGAGAGTCCGGAGTTGTCGGCGAGACACATGTAGCTAACGAAAACGAAAAACGGATTTGCAACGAAGGTACGGCGAATGAGATAAACGAAGAGCGAGAGGAGAACGAAGAACTCAACGTAGAAGCTTTACCTATTTTTATTACAGCCTCCGACGACGCTTCAATTCTTCAAAACGAAACAGTGcctaatttattgttaatcgACAAAGATTccagaaataattttgatccACTGCAGGGAGACATCACCGTTTACGAAGTTAACCCATGCGGAGTGTTAACACCGATAAAAAATCAACTCAACGATGTTGATACTGCTGAGTTGATAGTAGAATTGCCTAATAAATGTATTGATGAATTGACTTCGCCGAAATCGCCACCGAAATCGCCGCCGAAATCGCCACCGAAATCGCCATCGAAATCGCCACCGAAATCGCCATCAAAATCGCCACCGAAATCGCCACCAAAATCGCCACCGAAATCGCCGAGTAGCATTCGCTTAAATGTACCTTCGCCGTTCAAGCATGCGTTGTTTTGGCCTTCGCAAAAAAAAGGACCTCCAAAAAAGCGCCAAGATAAGGAGAAGGTGCCAACAGTAGTCACGTCTGATGCATGGAAACAATTCCAAGAGGCAAAAGCAGAAAAAAAACGtaaagaagaagaggaaaaggaagCGAGGAAAGCAGAACGTTTAAAGAAAGCACAGTTTAAGAAGGAACAACAAGAAATCGCAAAAGCGgcaaggaaaataaaaaaggagcAGCTAGAAATTgccaaaaaagagaaaaacgcTAAGAAGAGAGTTCAAAAAGAACAAGcacaaataacaaaaaaagtaaaaaaatag
- Protein Sequence
- METLDSSKVANLSQNASKRKKKSAARYTDAILKEALDAVKKGMPVSTASKQYNIPRTTLQYKNWGKSPPVIKSRGPECILGEEYERQLVQWIFYMSQNGFPVSRVQLLDSVQLLLKQIKTTTTFPDNRPGRHWYDAFRARHKNVTQRMSQNLTHSRAKVTEDKLRAWFNEVRIYFESKSLLDIDPSRVFNCDESAFFLSPKGSKALVKKGDKTVYNFINNDEKECLTTLICGSASGKIASPMVIFSYKRIPGHIARSMPKDWSIGHSENGWMTGETFYEYIANIFYPWLVKNAIMFPVVLFLDGHSSHLTMALSNFCREKEIELIALYPNATHILQPLDVAFFHPLKTAWAKVVGQWRLENNGERIKRENFAQLLQKALDMLDVKTILKNGFEKTGLHPFSADGINYQKYFKNSVDYATPQTTPSERIRTELEDYLAFIENNIEKEVLQIFKDVEEDAEWTGEPTHKSLFCFWRKIKSKMNSSEASHSISGESGVVGETHVANENEKRICNEGTANEINEEREENEELNVEALPIFITASDDASILQNETVPNLLLIDKDSRNNFDPLQGDITVYEVNPCGVLTPIKNQLNDVDTAELIVELPNKCIDELTSPKSPPKSPPKSPPKSPSKSPPKSPSKSPPKSPPKSPPKSPSSIRLNVPSPFKHALFWPSQKKGPPKKRQDKEKVPTVVTSDAWKQFQEAKAEKKRKEEEEKEARKAERLKKAQFKKEQQEIAKAARKIKKEQLEIAKKEKNAKKRVQKEQAQITKKVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01407186;
- 90% Identity
- iTF_01254722;
- 80% Identity
- -