Pimp017232.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- -
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000006.1:18022412-18023191[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-13 1.6e-09 38.7 0.0 2 38 9 46 8 52 0.89
Sequence Information
- Coding Sequence
- ATGGCTCCAACTCTGAAATACACAGCGGACCAAATGAGAGAAGCTTTAAAAGCGGTGAAGACAGGTGGCATATCCGTACGCTCTGCTAGCATAAAGTATAACGTACCTCGGACTACGTTGTCTGACAAACTGAAAAATAAAGTACCAGAGGAACGCAAAATGGGACCAGAGACTGTTCTGTCGGCTATCGACGAAGAACAACTAATCAGATGGATCATCGTACTAGGAAAAGCTGGATTTCCAGTTACAAAGGATCACCTACTGGACAGCGTAAAAATGCTGATTACCAAAGTTGGAAGAGAAAGGCCTTTTACTAACAACAGACCCGGGAGACACTGGTACCAAGCATTTATGCGACGGCATCCCGAAATTTCGACACGAGCACCCCAGAACCTATCTAAAGCTCGAGCTTTAATAACAGAGGAGAAGATAAAGAACTGGTTCAAAGAGATAcaactatattatatagaaaacaaCTTCACCGACGTTATCATCGATCCACAACGAATCTTTAACTGCGATGAAACCGCATTTTTTCTCAGCCCAAAGGGGAACCAGGTTTTGGTAAAAAAAGGTGAAAAAACGGTATACAATTTCATCAACAGCAACGAAAAGGAGTGTATTATGACGTTGATGACAGGAAACGCTGCAGGCGAATTGGTTCCGCCAATGATAATGATCAGCTGCAAGCGAATGCCAGCATCTATAGTAGCTGCTATGCCAGAATCGTGGGGACTGGGCAAATCTGACAACGGGTGGATGACGGCGGAGTTTTTATGA
- Protein Sequence
- MAPTLKYTADQMREALKAVKTGGISVRSASIKYNVPRTTLSDKLKNKVPEERKMGPETVLSAIDEEQLIRWIIVLGKAGFPVTKDHLLDSVKMLITKVGRERPFTNNRPGRHWYQAFMRRHPEISTRAPQNLSKARALITEEKIKNWFKEIQLYYIENNFTDVIIDPQRIFNCDETAFFLSPKGNQVLVKKGEKTVYNFINSNEKECIMTLMTGNAAGELVPPMIMISCKRMPASIVAAMPESWGLGKSDNGWMTAEFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868690; iTF_01254714;
- 90% Identity
- iTF_00868690;
- 80% Identity
- -