Pimp000329.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- lov
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000001.1:3224144-3228354[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7 1.1e+04 -2.3 0.0 4 20 345 362 345 363 0.72 2 2 4.2e-16 1.2e-12 48.7 0.0 1 44 524 567 524 568 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGAAACAGTCCTGACAGGATGGGTGTTCAATCCCTCTATTCTTTACGATGGAACAATCATCAAGCCCACATACAACAGTTCTTTCAAGAACTGCTGCATGAAGAGAATCTGGTCGACGTGACCCTGATTTGTGCCGAGAGCAGCGTCAAGGCACACAAAGTCGTCCTCAGTGCCTGCAGTCCTTTCTTCCAAAGGATATTCGCGGAGAATCCATGTAAACATCCCGTGATCGTGTTGAAGGACTTCTCGAATCATGAATTGTCCACGCTGATCGATTTTATGTATGGCGGCGAGGTGAAGATCGCCCAGGAGGAGCTACCGGGTTTGATGAGAGCCGCGGAATGTCTGCAAGTGCGCGGTCTATCGTCGTCGGAACCTAGGCTGGTGTCGGAGGAACCCAGGCCGTCGTCATCCTCGTCGACGCTTTTGGAGTTTACCACACCGGAGGACCCGCGACACGGTACTCcggaggaggacgacaacaCGTTGGAGAACGCGAGGGAGATAAAGCCCACATTGTTCCAACAAACGAGGGACCATCCTACTAAATCGCTTATTGGCCATCTGAACTTTCCCATCCGCGAGAGCTGTAGCTCACCGCTGATGCCGCGTCGAAAGCAGGCGCGTCCGCGCCGACGTTCCGGCGAACTGCTGCCGCAGGATCTGAGCAGACGCTCGAGTCCGCCGGCCAGCTTGAGTCCGTGCTTgccatttaaaaatgttttaaatctcAGTGGTAACCAGCACCAGGCACAGCAGCTGCAGCTGCAACAGCCTCAGTATCCTCAACAACAAATGATCAATAGAAATGATCAACAACAAATGATGAACGCTCAACAAAATCAGCAGCATCAGCAGCAGCAAGAAGATATGGCGGAGAATCTTTCGATGAAGAAATCCGTATCGCCGAGCGGACTGGACCAGCACCGTGTGAAGACAGAGGGTAGCGAAGCGACGAGCAGTCCGAGAGGTTCGCCGCTTACGGGGACGAGTCTGTTGCATCCGGAAGGTTCCATACAAGACATAGCGGCGGCGGTCGCCACCGTGATACCGTCGATATCTTTGTCGCAATCGCATCCTCCCGAGTACCTGACAAGCCTCAATCAGCTAGCGAGCCAATGGCTGCCCGGGCAGAGTCCACTGCCGCCGCCTCCATCGCAGAGTCATCATCCACGTGAAGACAGTCCTCACGGATCCGGTAGGTCGCTTTCGTATcagcaacaacagcagcagGAATCGGCAATAGTGCCACGACGCCCTTCCATGGCAATGTTTCCGTTGGACGGCGTGACTCTCAGCAGTGGACTTTTCTCTCACGCCGGCACATACGACAGGGCACTCGCGGATTCGTTTCTCACGGATAATTTCAAGCAGGAGGCGTTGCAGAACATCTTCGGTGCTCCAAATCTTGCTCCCCCTTCCAAGAAAACGAAAAAGCATCGGAGCGACGTCGATGGAACACCACGTAGATGGAACGATCACAATAGCCGCGCGCTCGCGGTAAATAGGCCGAAGGGGCAGCATAGTGCGCCGCGAGGAGGACCGCCGAGATCGTGGACAAATAACGAACTTACGTTAGCTCTGCAGCATGTCTGGGAAAAGAAGCTTACCACGTCTCAAGCTAGTCGTCTGTTCGGCATTCCTTATAACAGTCTGCTGATGTACGTGCGCGGCAAATACGGGAAGAGTCTAAAGCTGGAACAATTGCGTAGGAATTGTACCGGCGCCAGCACTCCCGAGATTATGAACAACAATAGCATCAAGCCCGTCCAGCAATCGGCGCAGATGAACCACGCGCTCGCCAGCCTGTCGTTGCAGCATCCAGGTGACAACAGCTTCGCCCCCCATCGCTCCCTGATCGGCGGCAACATGCCGCAGCCGCAAGGCTTCTACCCCGCCGAGTACGCCGCCGCGCCCTATCCCTTGGCGGTGAATATGGTGCATCTGTTACCTCCAAGTGAACAGAAAACTTTCGAGTCGTCCGCGAACTCAAGCGGCGACGGAAGTGGATGTCTAGGCGGTGGTGGAGACGGCAACGGTGGCGGCGATCTGACGAACTCGCAAACCAGCGAAACACCGTCGCCCATAgtcgatcatcatcatcatcatcatcaggagtcgtcgccgtcgtcgtcgatgCAGCAACCGTCACAGTCGGCGCCCCTGTTGCTACAACAGAACGGTTCGGATTAG
- Protein Sequence
- MSSVGNSPDRMGVQSLYSLRWNNHQAHIQQFFQELLHEENLVDVTLICAESSVKAHKVVLSACSPFFQRIFAENPCKHPVIVLKDFSNHELSTLIDFMYGGEVKIAQEELPGLMRAAECLQVRGLSSSEPRLVSEEPRPSSSSSTLLEFTTPEDPRHGTPEEDDNTLENAREIKPTLFQQTRDHPTKSLIGHLNFPIRESCSSPLMPRRKQARPRRRSGELLPQDLSRRSSPPASLSPCLPFKNVLNLSGNQHQAQQLQLQQPQYPQQQMINRNDQQQMMNAQQNQQHQQQQEDMAENLSMKKSVSPSGLDQHRVKTEGSEATSSPRGSPLTGTSLLHPEGSIQDIAAAVATVIPSISLSQSHPPEYLTSLNQLASQWLPGQSPLPPPPSQSHHPREDSPHGSGRSLSYQQQQQQESAIVPRRPSMAMFPLDGVTLSSGLFSHAGTYDRALADSFLTDNFKQEALQNIFGAPNLAPPSKKTKKHRSDVDGTPRRWNDHNSRALAVNRPKGQHSAPRGGPPRSWTNNELTLALQHVWEKKLTTSQASRLFGIPYNSLLMYVRGKYGKSLKLEQLRRNCTGASTPEIMNNNSIKPVQQSAQMNHALASLSLQHPGDNSFAPHRSLIGGNMPQPQGFYPAEYAAAPYPLAVNMVHLLPPSEQKTFESSANSSGDGSGCLGGGGDGNGGGDLTNSQTSETPSPIVDHHHHHHQESSPSSSMQQPSQSAPLLLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868979;
- 90% Identity
- iTF_00868979;
- 80% Identity
- iTF_01254919;