Pimp023083.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- retn
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000009.1:1026589-1033618[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-20 1.4e-16 62.1 0.1 13 89 1 75 1 75 0.95 2 2 2.1 1.1e+04 -1.7 0.0 25 38 208 221 172 226 0.70
Sequence Information
- Coding Sequence
- ATGGGTAAGGAGGggACACCTATTAATCGTCTACCAATCATGGCTAAATCTGTACTGGACCTTTACGAACTTTATAAATTAGTGGTCATGCGTGGTGGCCTGGTCGAAGTGATCAACAAGAAGCTGTGGCAGGAGATTATTAAAGGTCTTCGGTTGCCGGCGAGCATCACTTCCGCCGCCTTTACTCTACGCACGCAgtatatgaaatatttgtatCAATATGAACAACACAAGGAAAATCTCTCAACTGATGCACAGCTAACCATGGCTATTGAGACGAATCGTCGAGAAGGTCGTAGAAGCAACTACCCTGCTTATCCTGGCAACAATGAGAATATGGTGGGGCGAAACCAACACAATTCGCTCCCACCGAATACCTTGTCCTTGCCGATGCCTCTCAACATAAGCCATTTGGAAATGCATAGGTCACAGTCGCCATTCGTCAATGGGCATCCACAACAGCAGCATCATCCTCACAACTCGCAGCACGTTCTATCGCAGCCGAACTTGTCGAACTTTTCAGAATATATGCTGCGGATGCTGAGAGATAGGAGTACTGGCACTAACTCTATAATTCAACAGCAGAGTGATACGTCGCCACCCACTACGGAAGCACTTAACGCATTGGAGTTGTCCAAACTGTCGCTTTGGAATCTGTAtcaaaataacaataaaatctaTGTAGGATCCGGTCAACAACCTTCTTCTTCGCCGATGTCTAACTCGCCAGGAAATAGCTCGGAACAAAGAGAAGCTCTAGATCTTGCAAATTCTACGCATAGGTCAGATCCGGTATCCTCTCCAGGCGCTAGATCTGTAGGTTCACCAGTAATTATGCCCGGTAGTATGAAAAGAAATCaagactctctctctcctccatCTTCGAATACCAAAAGGATGTTGgttaaagaagaaaatgatCCTGAAAGGAATATGCGCGTTACGCAGGTGATCAGAAGACGAGagGATGGCCGGAGAGAACTATTCATTAGCGTAAACATCGATGGTATACTGTATGAAGGCGTTCTACCAGCCAAACACGATGATGACAACAGTACATAA
- Protein Sequence
- MGKEGTPINRLPIMAKSVLDLYELYKLVVMRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYQYEQHKENLSTDAQLTMAIETNRREGRRSNYPAYPGNNENMVGRNQHNSLPPNTLSLPMPLNISHLEMHRSQSPFVNGHPQQQHHPHNSQHVLSQPNLSNFSEYMLRMLRDRSTGTNSIIQQQSDTSPPTTEALNALELSKLSLWNLYQNNNKIYVGSGQQPSSSPMSNSPGNSSEQREALDLANSTHRSDPVSSPGARSVGSPVIMPGSMKRNQDSLSPPSSNTKRMLVKEENDPERNMRVTQVIRRREDGRRELFISVNIDGILYEGVLPAKHDDDNST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -