Pmac035532.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- Hivep1
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:30362151-30364374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.24 99 6.2 0.1 7 23 192 208 192 208 0.92 2 9 8.7 3.6e+03 1.3 0.3 2 8 216 222 215 226 0.86 3 9 0.21 89 6.3 2.5 2 23 256 277 255 277 0.98 4 9 0.058 24 8.1 1.9 1 13 283 295 283 306 0.82 5 9 0.005 2.1 11.5 0.4 1 23 344 367 344 367 0.88 6 9 0.0098 4.1 10.5 3.0 1 19 374 392 374 397 0.96 7 9 7e-07 0.00029 23.6 3.4 1 23 403 425 403 425 0.97 8 9 5.1e-07 0.00021 24.0 3.7 2 23 431 452 430 452 0.98 9 9 0.0017 0.73 12.9 2.5 1 23 458 480 458 480 0.98
Sequence Information
- Coding Sequence
- ATGGAACCATCTATAGTTTGTCGCTCttgtttgacaacaatttcttTGGAGTACATAGATTTAGAAACGCCACTCTCTGGTGGTACCACTTTCCTCGACTGTTTCAATTATTGCACTCGGCTTCAAGCCGACATCGACGATGCACTGCCCAAAATCATTTGTTGTTCTTGTGCCAGTTCATTGCAGACATCCTATGACTTTATTAAAACATCATGTGATTCCGATAGCCTGCTTCGTAATAGTCTGGTCTGCTATGGAGATCTTGATCACATAGAAGACAACAAGGATGTATTTATTTACGATGTTAAAATGGTAGAAAATAATGAAGACGAGAATTATCAAGCCACGGCTGTGCACAACTCTACGGAATGTGAAGAAATAGAAGGAACCATCTTAAACTTGCTTAAAGAGGAAACCGATGAGAAGCTGCCCATATTTGAAGTGGTTATTCCCAGTGAGGAGGTGGCTATAGAGGAAGACGAACATTGGCTATCGGATGATAATGATACGAGTCAGAAAAGTGTCAATGAGACTTTAACATGCAAAGTATCCAGCTCCTGCTTAACAAGTGGTGACAAATGTTTCGATGAATCCAGTCTGCAACGGCATGTAAATAAAGAGCACGGAATACAAAACAAACTAGTTGTGTGTCCATATTGCACGAAAGAAATAAAAGGCATTTCCCAACATATAAAGTGCAATCACCTAGATATTCTGCGATTGCCCATGAAGTCTGAAGGTGACAGTGTTAAATTGTACAAAAACCAGTGTTCGCACTGTCTCCGGTACTTTCAAAGCAAAACAATTCTAATTGATCACTTAAACACGCACACGGgTGAACGACCATATTCATGCAGAACTTGTGGAAAAACATTTAGCGAGAAGACTATTTGCGAGAGACACGAAGCCACAATGCACCTGCCGAATGACGCACCCAGGAAAACATGTGAATTCTGTGACTTTGGCACATCCAATATTTGTTCGTTTAAATGCCATACCAACCGTCACCGTCAACCGcagaaaaagaaatatctttGCGCCTTCTGTCCAATGACATTCACGAGTCCAAAAACACTTGAACTGCACGAAGACTATAAGCATAAACACGGGGAAAAACCCTACAAATGCGAGGTATGCGAAAAATCGTTTTACATCAAGCGGAAACTAAAGGAACACAATCTGTGCGTTCACACAAAGGGTCGACCGCATGAGTGTTCAGAGTGTGGCaaaacattcaaaaacaattttcagctGAAGGCACATTACAAGTTACACACCTCCAAGGAGATCCAGTGTTCGCAGTGCGATAAAAAGTTTTGTCGAAAAATTGACTTGAGGATCCATATGCGAACACATACGGGAGAATTGCCATACGAGTGCCATTTATGCGACAAGCGATATGCCATCAAAGTGAGACTCACTTATCACTTGCAAAAGCACATGGGCTTCAAGCACAAATGTGATCATTGTTTGAACGAATATGCTAGTAAGGCTTCATGCTACTTCAAGCGACTATTTCTTTTCGCCGAACATTTCGAAGCAGACGTATGCCAGATGTTCTATTAA
- Protein Sequence
- MEPSIVCRSCLTTISLEYIDLETPLSGGTTFLDCFNYCTRLQADIDDALPKIICCSCASSLQTSYDFIKTSCDSDSLLRNSLVCYGDLDHIEDNKDVFIYDVKMVENNEDENYQATAVHNSTECEEIEGTILNLLKEETDEKLPIFEVVIPSEEVAIEEDEHWLSDDNDTSQKSVNETLTCKVSSSCLTSGDKCFDESSLQRHVNKEHGIQNKLVVCPYCTKEIKGISQHIKCNHLDILRLPMKSEGDSVKLYKNQCSHCLRYFQSKTILIDHLNTHTGERPYSCRTCGKTFSEKTICERHEATMHLPNDAPRKTCEFCDFGTSNICSFKCHTNRHRQPQKKKYLCAFCPMTFTSPKTLELHEDYKHKHGEKPYKCEVCEKSFYIKRKLKEHNLCVHTKGRPHECSECGKTFKNNFQLKAHYKLHTSKEIQCSQCDKKFCRKIDLRIHMRTHTGELPYECHLCDKRYAIKVRLTYHLQKHMGFKHKCDHCLNEYASKASCYFKRLFLFAEHFEADVCQMFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -