Basic Information

Insect: Portevinia maculata
Gene Symbol: ush
Assembly: GCA_949715645.1
Location: OX454525.1:77079744-77083769[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.013 5.5 10.1 0.0 1 20 170 189 170 191 0.90

2 9 0.00026 0.11 15.5 0.8 1 23 236 258 236 258 0.98

3 9 0.028 12 9.1 1.0 2 21 283 302 283 303 0.92

4 9 0.045 19 8.4 2.9 2 21 660 679 659 680 0.93

5 9 0.0081 3.4 10.8 0.0 3 21 717 735 715 736 0.92

6 9 2.2 9.3e+02 3.1 0.2 1 23 782 804 782 805 0.66

7 9 0.013 5.5 10.1 1.3 1 23 810 832 810 832 0.99

8 9 0.00017 0.072 16.1 0.6 1 23 900 923 900 923 0.96

9 9 0.22 94 6.3 1.4 2 20 1052 1070 1051 1072 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.013	5.5	10.1	0.0	1	20	170	189	170	191	0.90
2	9	0.00026	0.11	15.5	0.8	1	23	236	258	236	258	0.98
3	9	0.028	12	9.1	1.0	2	21	283	302	283	303	0.92
4	9	0.045	19	8.4	2.9	2	21	660	679	659	680	0.93
5	9	0.0081	3.4	10.8	0.0	3	21	717	735	715	736	0.92
6	9	2.2	9.3e+02	3.1	0.2	1	23	782	804	782	805	0.66
7	9	0.013	5.5	10.1	1.3	1	23	810	832	810	832	0.99
8	9	0.00017	0.072	16.1	0.6	1	23	900	923	900	923	0.96
9	9	0.22	94	6.3	1.4	2	20	1052	1070	1051	1072	0.91

Sequence Information

Coding Sequence: ATGAGTACGGAAACAAAAGATCTTAGCCCAAGCGATTTGAATGAGCAAGCTGACGCGGTGTCGTCGGCGGACATAGATCAATCAGCCGAACCGCGTACTCCGTTTACAACAGAATCCTTAATGGACGAGAACCGTCCATCGTCGAGTACACCTCGAACACTTTCACCGCCCTCAGATCCGGAAGCCGAAGAACACCCTTCGGTACGTTCGGATCTATTGTCGGCGACGAATTCACCCTCAGAGCATGATGATTCATTAATAGTTCCTGCTTCTGCCGTTGTTGCTGTGTTTCCTAAGCTACGGCTAAATGCTCTTTTAGCTTCTGATCCTGCCCTAAATCCGGGTGCGCGCAATTTGAAAATTCTACACGAGGAGTCAACCAAGAATCATCATCATGAGGAAGCTGGAGCAGGTGTTAAATCAGCACCGGTTGCAGTCGATCAAAAAGTCGGAACAAAAAATCAAACGTCAGCTGTTGTTGTGGACAACGCGCAGAGGGTGAAAGTGTTTATGTGTCTTCCCTGTGGGATTGGATTTTCATCGAGGTCGACACTGGAGGCACATCAGGCGTATTACTGTTCCCACAGgaaagaAGCCGAGGAAGATCCAGCTGGCGGAGGCACTGGAAGTGCCTCTTCGGGAGATAAAAATTCCACCATAACATCCGGTGAGCCATCAGCTAAATCTATTAAGACTGGCAAGCAGTACGCTTGCACACAGTGCTCATACAGTGCCGATAAGAAAGTCTCGTTAAATCGTCACATGCGTATGCACCAAAGCTCACCGGCGCCAAGTTCGAACGCCTCGAATGGTGGCGATGATAGTTCTAGTCAAcaaatcgATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTTAAAACGTATCGGGCACATAAGCAACACTACTGTAGTTCCAGGCGCAATGATGGTCAAACGACGCCAAAACTTCCAGAGCCAAGTTTAAAAACGAGTGGCGGTTCGGTAAGTCCACCACAGGCGCGAACGAAAACACCAACTCCAGCTGCGGCAGCCGCCGGTGTAACGCCCCAACCGTTCATTGCTCTACCGACAAATCCTATTCTAATAATTCCATATTATCTTATACGAGCGGCCAGTATGATTCCGGGACCATTAACATCGATATCGGCGGGCATTGCAAATCCCGAAAGCACATGTTTCTCATTAGAAAACGGATCTCTTAAGCCAATGGCGACCGCGTTAAGCACCAGTAGCACTACAAACAACCAAATTCCCCATGTTGACCCTGGATCACGATCGCATCCCCCACCACCAAGTACTCCATCGAATAATGACCTCGCAACGCCACTGCTAACTGAAAAAAATACGCGCGCATCGTCTGCAAATATTTGCATTGATACTGTTAAGCAGAGTAAAAAGGAGGGCACTAGAGACTTTGCTCCACTGGATCTGTCACTTAGACGTTCTCCCATCCAAAGAGCGCAACGTATTCGCCCATCTTCAAGTTTCATGCAACCAACTGATGATCAGATTGATATCGAATCGATGATGGAGGGCAAGGAGAATCTGTCCATTGACAGTGGAAGTATCACAcctgaacaaattgtttgtgcccCATCTCTTCCCAACAGTCCTTCCATGAGCCCATCGCCGAAGCGACGCGCCTTCAGTCCACGAAGCAGCAGTGCGGCTTCCATGTCACCAGTGCCGCCCTCTGTCCTGGATCATCTGCCTTTAAGATCGATTCTACCCTCCGACATTGCCATGAAACTTACTGACCCGAATATTATTCCCCCGCTGATCGCTAAACAAAATCTGGAGTTAGCTTTTAAGTTGTCTTCTGCCGCAGCTGCTGCATCGGCCAACAGTAAACAAACCGATTCATCAAAAGCGACAATGAGTAATTCACTTCTAGGCCACCCTGGTGCGCCCATTAATGTAGGGGCAGCGTCTAGTGGACAGCCACAAATTTTTGTCAAGCAAGGCGTCTCCAAGTGTAAGGAATGCAACATCGTCTTTTGCAAATACGAGAACTACTTGGCCCACAAACAGCACTATTGTTCGGCTAGAAATCAAGAGGACACTGAGAATAAGATTAGTACTTCTCCATCGGCATCAAATTCCGGAGTGGAAACGAATCCGATTGCCTACCAACAGTTGATCTGTGCAGCTTGTGGCATCAAATACACTTCGTTGGATAACCTGCGGGCACATCAGAAGTTCTATTGCCCCAAGGGAGGTGGTGATGCAGCTGCTGCACCTCCAGTGGCAAAGGAGAAATGTGCAAAGTGTAAGACGCTTCATGAAATCGGTCAGCCATGTCCGCCAATAGCTGCGGTCGCCTCGCAACAAGGTTCGTACAAGTGTCCCTTTTGTGATGTCGTCAGTCTAACAACTGGAGAGAGTCGAAAACACTTAGAAACTCATGGCAGTGTGAAGGCGTTTCGCTGCTCCATTTGTCGGTACAAAGGGAACACGTTACGTGGCATGAGGACACACATTCGAATGCATTTCGACAAGAAAAATTCGGACTTTAACGAGGAGAGCTATATGTCTTGCATTTTAGAAGATGACGGCTTGGAGATTCCAAGTCCAGCGTCTATAAACCAAGAACACATTTCAAAATTcgctcaacaacaacaacaactgctacaacagcagcaacagcagtcaacaGCACAGCAACAACATTCGCCACAGCAACAACAGATATTCAACTGTGAAATATGCAACTACTCCTCCTCCTACAAGGGAAACGTGATGCGTCATATGAAGCTGGTTCACTCCCAACCTGGCACATCGCCTTCAATTTCCCCCGAGATGATTCTGGAAGAGGGTGCTGATCACATCAGCCACAGTCTAAATGGAGACAATGGTAGTAGCCTTCCCGAGAGTTTCACCATCAAAAGTGAACCATTAGAGCCAAGTACAGCCGCTACCATTACTAAGAACAATAACAACTCTACTCCGAATCATCATCTGCTAGAACCACTGGTACACATCAAATCAGAACCAATGGACGTTACAGACGGAGTAATTAGATCTCTGCCTTCTCCACTATCAGTTCCACCACCACCGCTTAATTCATCACCCCTATCTGGTGATGAGAACTCATTGCTAAGGAATTCTACTTCGATTGGCTCCAGTGTAGTGCCTTTCAATCAGAAGTATTGCCATACGTGCGACATTAGCTTCAACTACATGAAGACTTACCTAGCGCATAAGCAGTTCTATTGTAAGAATAAGCCTCGTGGAGATTCAGATAGTCCGAGTCCGATGCCGCCGGTGCAATCGCCAACTATGTTGAATAAGAACAAGGAGAACTTGGAAGCGGCTATGTTGTAG
Protein Sequence: MSTETKDLSPSDLNEQADAVSSADIDQSAEPRTPFTTESLMDENRPSSSTPRTLSPPSDPEAEEHPSVRSDLLSATNSPSEHDDSLIVPASAVVAVFPKLRLNALLASDPALNPGARNLKILHEESTKNHHHEEAGAGVKSAPVAVDQKVGTKNQTSAVVVDNAQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEEDPAGGGTGSASSGDKNSTITSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLPEPSLKTSGGSVSPPQARTKTPTPAAAAAGVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSISAGIANPESTCFSLENGSLKPMATALSTSSTTNNQIPHVDPGSRSHPPPPSTPSNNDLATPLLTEKNTRASSANICIDTVKQSKKEGTRDFAPLDLSLRRSPIQRAQRIRPSSSFMQPTDDQIDIESMMEGKENLSIDSGSITPEQIVCAPSLPNSPSMSPSPKRRAFSPRSSSAASMSPVPPSVLDHLPLRSILPSDIAMKLTDPNIIPPLIAKQNLELAFKLSSAAAAASANSKQTDSSKATMSNSLLGHPGAPINVGAASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDTENKISTSPSASNSGVETNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDAAAAPPVAKEKCAKCKTLHEIGQPCPPIAAVASQQGSYKCPFCDVVSLTTGESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKNSDFNEESYMSCILEDDGLEIPSPASINQEHISKFAQQQQQLLQQQQQQSTAQQQHSPQQQQIFNCEICNYSSSYKGNVMRHMKLVHSQPGTSPSISPEMILEEGADHISHSLNGDNGSSLPESFTIKSEPLEPSTAATITKNNNNSTPNHHLLEPLVHIKSEPMDVTDGVIRSLPSPLSVPPPPLNSSPLSGDENSLLRNSTSIGSSVVPFNQKYCHTCDISFNYMKTYLAHKQFYCKNKPRGDSDSPSPMPPVQSPTMLNKNKENLEAAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: -
80% Identity: -