Pmac091863.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454528.1:77168127-77169064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.065 27 8.0 0.1 2 23 61 83 61 83 0.94 2 8 9.9e-05 0.041 16.8 3.0 1 23 86 109 86 109 0.94 3 8 7.1e-05 0.03 17.3 2.6 2 23 115 136 114 136 0.94 4 8 9e-05 0.038 17.0 3.4 1 23 142 166 142 166 0.97 5 8 1.2 5.1e+02 4.0 1.4 3 23 174 191 172 193 0.77 6 8 8.8e-06 0.0037 20.1 3.7 1 23 197 219 197 219 0.97 7 8 5.3e-05 0.022 17.7 2.3 1 23 225 248 225 248 0.96 8 8 6.6e-05 0.027 17.4 0.8 1 23 253 278 253 278 0.95
Sequence Information
- Coding Sequence
- atggaaagttgcgaagTCCTGGCCGAGGAATTTCTTGgttatttagtgaaaaaaaattgcttcACGCTTTTAAATAATCGATTTCTTTCAGAGCTAATAGAGGAAGATTTTGCTGAACTAGAAACTGACCTGAAATTCACCACCGAAAGTATTACCGATAATAATGAGCAAACGGAACCGGTATGTTTCCAATGCTTTAGGGAATTCAAATCAGACCTTGATTTGCTAGATCATATTGAAATTGAACACTTTACACATTTTTGTGCGAAATGTGATAAACGATTCCCCACCGACAAAAAACTGAAGAAACATTTGAGAGAGGCTCATTTGACCGGGAAGGTCGAATGTCCTCTGTGTGATAAAGTGTTCACTCGCAAGGACCACTGCAGGAATCATATATATGCGCACTCCGATAAACCATTATTTCATTGTAAGTATGTAAATTGCGAAAAAGTCTTCCGACAATCTGTCTATCTAAAGCAGCATGAACGCAGCCATACTGGTAGTCATCGGAAAATGTGTCCCATATGCAATGAGAACGTAGCACAATTGTCCAAGCACTTGAATTCCCATCTGAAATTGAAACAACATCAGTGTGATAGCTGCGATAAATCCTTCACCCGCCGTAGCTATCTGGTAGAACACAAAAAGTTACATCTTGGCTATCCGGGATTCGCATGTGATGAATGTCAAACTGAATTCAAAAGCTCAACTTCTCTATATAAACACAAACGAAGTAAACACAGTGCGGAGCGGTATTTTTGTGAGATTCCTGAGTGCAAGCAGGAGTTCAACCGTAAAGATAATATGGTATCGCATATGAAACGTAGGCATAAGTTGATCGTTGAAATGGTTACGATCGATGATTTGAAATTGGATTGA
- Protein Sequence
- MESCEVLAEEFLGYLVKKNCFTLLNNRFLSELIEEDFAELETDLKFTTESITDNNEQTEPVCFQCFREFKSDLDLLDHIEIEHFTHFCAKCDKRFPTDKKLKKHLREAHLTGKVECPLCDKVFTRKDHCRNHIYAHSDKPLFHCKYVNCEKVFRQSVYLKQHERSHTGSHRKMCPICNENVAQLSKHLNSHLKLKQHQCDSCDKSFTRRSYLVEHKKLHLGYPGFACDECQTEFKSSTSLYKHKRSKHSAERYFCEIPECKQEFNRKDNMVSHMKRRHKLIVEMVTIDDLKLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00725043;
- 90% Identity
- -
- 80% Identity
- -