Pmac030687.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454525.1:364541162-364546526[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1 4.3e+02 4.2 1.3 1 23 1179 1202 1179 1202 0.92 2 12 0.0001 0.042 16.8 5.0 2 23 1368 1389 1368 1389 0.97 3 12 0.00014 0.059 16.3 0.2 3 23 1397 1417 1395 1417 0.98 4 12 2.8e-07 0.00012 24.8 3.6 2 23 1424 1445 1423 1445 0.97 5 12 2.8 1.2e+03 2.8 0.1 5 23 1458 1476 1456 1476 0.96 6 12 0.0082 3.4 10.8 3.4 3 23 1483 1504 1481 1504 0.95 7 12 0.15 61 6.8 0.1 2 23 1515 1535 1514 1535 0.96 8 12 0.00021 0.086 15.8 0.8 1 19 1541 1559 1541 1560 0.96 9 12 6.2e-05 0.026 17.5 0.5 1 23 1571 1593 1571 1593 0.99 10 12 0.00023 0.096 15.7 9.0 1 23 1599 1621 1599 1622 0.96 11 12 0.0012 0.51 13.4 4.7 1 23 1627 1649 1627 1649 0.98 12 12 0.0015 0.63 13.1 6.0 1 23 1655 1677 1655 1678 0.96
Sequence Information
- Coding Sequence
- ATGGGTGGCAAAGTACAGTGTCCAGTGTGTACACTATTCCTTCTGCCGGGTATGGACTTATCGGACCATCTGGAGACACATCCAAAAGAGCAAGTCATAAAAGCACTCGTACAAATGAGCCTCAAAATTGAGGTAGCCGAAACAGTCACGCCTGATAATCCTAAGATTACCAACGCCACATCATGTATTGAGAATGATGCCAATCATCAGGCAACAGAAGATGGAAAAACCACTCCAATGTTAGAGACGTGTGAAAATATGGTGGGAATCAATGATAGGCGAAGGGATCTGAACGAGCATATTGTTCTCCCTTCCATACCTCAGAATAATTCAATGAATAGACAATGTGGATATCTGTTTGAGAACAATAGCAGTAGTAGCAGCAGTAGTACTAGTAGTAATTTCTTTGGACCACCGACTCCATATTATCAAATTAATCATCAGCTTCAtaatcaacagcagcagcaacaactacAACCGCAACATAATCATATACACAATTATCATGCCTATCATGGACATCCAGGTTCTTCGCAGCCAATGCGCCTCTTTTCCTATCAACCAACATCCAAGCCGCTACAACCACCCCCAGCTTATGGCGCCGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAACCTCATGGTAAACAACGTGAGTCGCCCGCAATATTCACCGGCAAGTTACACATCCTCATCAACAATGACAGTGGCGTCTTCATGTCTGCCGCCCCCATTACCACCGCCACCTCTTAATCAGCGCTATCAGCCAAATTTCGGGCAGATGGAAACACCCTCATTTACTGAGACCACTGGCAGTAGTACAATGTCTCCGCGTCGAACATCGATGACACCCCCAATACGACTTCCCCCGGAGTTGTACCGATCACCGCTTTCATCAACCGGACAGAATTCCAGGCAGTCCAACTCTCCCTATACCGTAATGACAGGTTCACCGTCTGTCTTGAGATTTGCGGAATCCCCAGTAACCGCGCACTACTTGGAGCGAGAAAATGGTGATTTTATTGTTCAAGAAACACCCAAGCACGTGGTCGAGTGTGTGGAAAAAGACGACGGAGAGTTTTCAGTGATAGAGAGAGTGTATCATATGCCACCGAGTGTTGTTCAAATAAACGAGGATCAAGACGATGATATGTCGTCCGACCATGGATCCAATAGTGAAGACATTAAAATGCTGGAAGATGATCTGCCGAGTGGAACATGGTCCGGCGGACGATCGCCAGAACAAGGGCCAATAACCCAGAAGGAACAGCAGAAGAAGTCCGGTATCACCGTACTCAGTGATGTACAATTAGACTTAAACGAATACCTAGACTTAATGGGTAACATAATAGCCTCCAGCAAGGTGGCTAAAACTCGTACTGACATGATAAAGATTGAAAAGTTCGACCCCGAAGAGGTTAAGGAAGAAATTGCAAGCAGTTTATGTCTTAGTGGTGACGAGTATGAAAACGCGGACGACGATGCCTTGATGGAAACCAAAAAGAAGGAAGAAGTGACTGATGAATCGTTATGTATCATCCCAGTAGCTATAGCAGTAGCGTGCAGTTCTGCCACATTAACTCCGGCATCATCGGTGACAAGTGTTATACGATTAGCAACAAATCCCAATGCCAGAAACACCACTCCCTTAAATCAATACACGCATGTAGAAGAACCTATCTCTGGGCCGAAATTTGAGGAAACTGGGACGCCAGCAGCCGATGGTATGCGAATAACCAAAGTCGAGGAAGCTTTGACATCCACTGGTACTGCTAAAGAAACCATGAAAGAAACAAGTTTGAAACCAAATGTTGAGAAAGCAGCAAGCACTGATGTAACTGTTACCAAAGTTGAGGAAGCTATGCAGACAGAAAGCCTAACAGATGCACAACCCGAACCCCAACTACAGACAGAAAAACCCCAAGTTACCGAGCCCCTCATTAGACatgtgaaaaaagaagagaggtCCCCAGGTCCTGCATATCACCAGTCAGTCAGGCGTCCCATAAAAAAGGCCACAAAAAAACTTATCATCAAACCACGAAGCAAGGTACCCATAGCGTCGATACCTATTCCAATACAAAAGCCATCAACCTCAACAGAAATACCTCCATTTGAACCGCTAAAAGAAGAAGTACTGTCCGAAGCGTCCGAGACAACTCAGGGAAATGAACTAAAAAGCATTAAGACAGAAAGTCTATCGACCACTTCTTCAGACTCAATTCCACCGCCTCTGTTCGCTGACGCCGATGAAAAGCTTCCACTCGACGATGATGTGCAACCATCTACATCGGACGCAATTGAGGCAGAGGAACAGGCATCTCCTGTGTTGCCAAGACCAACTTCAGATGACAAACCCACCGCCGACTTGGTAGCCTTACTCGATCAGTGCATGAAGAAGGAAGAAGAGGCTGAAGATCATCCAATGCACTCTTTATTTGGAATACAGAGCACATCGGATCCATTGAACGATGCAATGCCTGCGTCCTCTGCGTTTCCATCGGCTTCTTTATTCTCAAAGCCATTGGCAAAAGACGCAGAACAGCTTATCATACCCGAGTCTATTCTTCCCGACATTAAAGATATCCAGAAACAGGAGGATGATCTATCATCATCGCAACAACCTGTGTTTCCGTCGGCTTCTCTGTTCTCAAAGCCATTGACGAAGATAACAGAAGAACTGATCATATCCGAGTCCATGCCTCCCGACAGCTGTGATATACAGGAGACGGAGAATCTACAACCACCACCACAACAGCCTGCGTTTCCATCAGCTACTCTGTTCTCAAAGCCACTGACGAAAAGTACAGAACAGTTTATCATATCTGAGTCAATTCTTCCCAACAGCAATGATATACAGGAACAGGCAGACCCACCACCATCACAACAGCAACAATCACAGCCAaaccagcagcagcaacaaaacaCTTCAACGTACGTTGAATATCCATTTAGTTTCTTCTACGGGACGAACCACGAAGAGGATATCAAGCACAATGTCTCTCCGCCAATATACTGCACAGAGGACTTCAACAAGTACAGTGCAAGTACAAGTGGAGGAAATAGTGCCAGCTGCACCTGGTACCAATCACAAAGtagtgaaaatgattttgaaatggaCGGGAAAGGAAGCTACCTCGATTTAGATTCGTGTAAGCGGAGTACGTCATTTGCGGCAGCTACTGAGGGCAGTATGCCGACAACCGACACCCTCAACATAAGAACAGACGAAAAAATGCCAGCAAAGGGAGAGATATCGGAACAAGAGAGCAATTGCGGTGTGGAGAACTCATGGAGCCAGGCGCTTTACAATGAGTTTCCCGTGCGTTTCCCGAATACGTATCAGAACTTCATGACGGCCCAAGAAAGCTGGAGCCACGATAACTACTTTCGTCCTCAAGACCTCAGCTCACCTGTCGAGACAAAAAATTTTAGTTTGCGGTTAACAGAGGAATCCCCCATCATGGACACTTTGCCGTCGACATCAAAGCGAAAGAATAAACCTGTCGGCAAGTTTGCACGCAAAAAAACGTTCCAATGTGCGCATTGCAAGACTGATTTCCCGCTGCTCAAAGAGAAGAACGCGCACTTGGTCAAACAACATGGCTACAAGCGCGTCAATCGGCAACTTGTACGTGACCCACCGACTTCAACGGTTACCACAGCAACAATGAACACAGAAGCTGGTGCCTCATTGCTACTCGGTCTGGAACCGAGTGCACTACCACCACCACCGTTGGCCGAAGAGGAAGACTCCAAAGCATCGATTGTAAAAATTGAACAGGACAATAAAGCTGCTATTCGCAAGGAACGTAAGAGTGAATGCAAGGAAACAATATCCAATCTTTCACTAACCAGCACAGTGCCAGCCCCCACTAATGCGAACGTATCTCGCACCAAGTATGACTCGTTGCGAGCACGCGACAATCGAGTGcttatcaatttcaatttaaatgcGCTCAGCATCAAGAACGAAGGAAAATCCGATGTCGAAACGCACTGTTATACGGATTCAAAGTTGGCTTTTTTCTGCTTTGTTTGCCGGCGGGACTTTCTCACGAACAAGCTGTATGATGAGCATTTGGTCGAGCATCCAGCCGAGTGCTTTACATGCCACAAGACATTCACGCGATGGAAAAACTTTATGGTCCACCTAAAGCGGCATCTTGGATGGAAGGACTTTGGCTGCACTATCTGCGAGAAGAAGTTCGTAATTCGGAGCGCGCTTGTGGAGCACATGCGTATGCACACTGGTCATACGCCTCTTAAGTGTAAGGTATGCGGCAAAAGCTTCAAACGCTACTCCAATCTAACGCAGCACCGCAAGCGTCACGGCATCAGAATCAATCGTAACAAAGAGTACGTTTGCTACTGCGGCGAAGTACTGCCGTCAAAAGCAcgttttatctggcataaagaGACACACGATTTGAAGCCAAAATGCTGCCCATACTGCCGGGATCGTTTTGtgcacgcaaacagtttgcgCCGACACATACGATTGGCGCACTCAGACAAGTTCGACTACACCGAGCCGATGGAGTGCCCAATGTGCAAGCAAATTTACGCTAAATCCAGCATCAAGGCGCATATGGCGACACATTCTATGGACACACAACACGAATGCCTGATCTGTAGTAAATCCTTCAGCACCAAGTGGAATCTGAAAATCCACAACTGGGTGCACGCCAATCGCACCAGTAAGCCCTTCAAATGTGATCAATGCGTAAAAGCGTTTGTCCGCGAAGTGGACTACAATAACCATATGAACTCCCACAAACAAATCAAGCCGTATACATGCGAGCACTGTGGCTGCAAGTTCATACGCAAATACAATTACATCCGGCATCGACGTGAGCACCATGGCAACAAGAAATTCACCTGCGATCTCTGCGGCAAACTTTTCCACCGACACTACTATTTGATCGAGCACCGGCGCATCCACACTGGCGAGCGACCGTTCCAATGCACGATATGCGGCAAGAGTTCCACCACAAAGACGAACCACAATAAACACCTAAAGATTCATCATTCGCGGGATCCGTTCACATCGGAGGCGTAA
- Protein Sequence
- MGGKVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQMSLKIEVAETVTPDNPKITNATSCIENDANHQATEDGKTTPMLETCENMVGINDRRRDLNEHIVLPSIPQNNSMNRQCGYLFENNSSSSSSSTSSNFFGPPTPYYQINHQLHNQQQQQQLQPQHNHIHNYHAYHGHPGSSQPMRLFSYQPTSKPLQPPPAYGAAISQLRSQNSQNLMVNNVSRPQYSPASYTSSSTMTVASSCLPPPLPPPPLNQRYQPNFGQMETPSFTETTGSSTMSPRRTSMTPPIRLPPELYRSPLSSTGQNSRQSNSPYTVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDDMSSDHGSNSEDIKMLEDDLPSGTWSGGRSPEQGPITQKEQQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKTRTDMIKIEKFDPEEVKEEIASSLCLSGDEYENADDDALMETKKKEEVTDESLCIIPVAIAVACSSATLTPASSVTSVIRLATNPNARNTTPLNQYTHVEEPISGPKFEETGTPAADGMRITKVEEALTSTGTAKETMKETSLKPNVEKAASTDVTVTKVEEAMQTESLTDAQPEPQLQTEKPQVTEPLIRHVKKEERSPGPAYHQSVRRPIKKATKKLIIKPRSKVPIASIPIPIQKPSTSTEIPPFEPLKEEVLSEASETTQGNELKSIKTESLSTTSSDSIPPPLFADADEKLPLDDDVQPSTSDAIEAEEQASPVLPRPTSDDKPTADLVALLDQCMKKEEEAEDHPMHSLFGIQSTSDPLNDAMPASSAFPSASLFSKPLAKDAEQLIIPESILPDIKDIQKQEDDLSSSQQPVFPSASLFSKPLTKITEELIISESMPPDSCDIQETENLQPPPQQPAFPSATLFSKPLTKSTEQFIISESILPNSNDIQEQADPPPSQQQQSQPNQQQQQNTSTYVEYPFSFFYGTNHEEDIKHNVSPPIYCTEDFNKYSASTSGGNSASCTWYQSQSSENDFEMDGKGSYLDLDSCKRSTSFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQALYNEFPVRFPNTYQNFMTAQESWSHDNYFRPQDLSSPVETKNFSLRLTEESPIMDTLPSTSKRKNKPVGKFARKKTFQCAHCKTDFPLLKEKNAHLVKQHGYKRVNRQLVRDPPTSTVTTATMNTEAGASLLLGLEPSALPPPPLAEEEDSKASIVKIEQDNKAAIRKERKSECKETISNLSLTSTVPAPTNANVSRTKYDSLRARDNRVLINFNLNALSIKNEGKSDVETHCYTDSKLAFFCFVCRRDFLTNKLYDEHLVEHPAECFTCHKTFTRWKNFMVHLKRHLGWKDFGCTICEKKFVIRSALVEHMRMHTGHTPLKCKVCGKSFKRYSNLTQHRKRHGIRINRNKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICSKSFSTKWNLKIHNWVHANRTSKPFKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -