Pmac033849.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:5347498-5350368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.6e-05 0.015 18.2 5.1 1 23 223 245 223 245 0.98 2 10 3.6e-07 0.00015 24.5 0.5 1 23 251 274 251 274 0.98 3 10 2.7 1.1e+03 2.8 3.2 1 21 323 343 323 345 0.76 4 10 2.8e-05 0.012 18.6 0.7 1 23 351 373 351 373 0.97 5 10 0.0006 0.25 14.4 1.2 1 19 379 397 379 399 0.97 6 10 1.1e-06 0.00044 23.0 0.3 1 23 407 429 407 429 0.98 7 10 0.0053 2.2 11.4 2.9 1 23 435 457 435 458 0.94 8 10 2.1e-05 0.0086 19.0 0.2 2 23 509 530 508 530 0.97 9 10 0.00074 0.31 14.1 6.2 1 23 536 558 536 558 0.99 10 10 0.046 19 8.4 0.4 1 20 594 613 594 614 0.93
Sequence Information
- Coding Sequence
- ATGACTGAATTAAACCAAACAAGGGTTCAACAAACATGCACAGAAATCTGTCGAATTTGTGGTAGCAAAGAAAACCTCAAACATGTGTTCCAAGAAGGCACGGATGAGCTGCTGGATAAAATCCGCATTTGCGCAAATATTCACATTGATGCTCTTGACAGCTTGCCCAAGTTTGTATGTAGAGATTGTGAAGAGGGACTGGAATTCTCATACCGTCTTCGAAAACGCGGCGAAGAAACTGAAAAAATGCTCCGACAAGAATTGCTTGATTCAGTTAAAATACAACCCTGTTCCTCGGACGAGGAAAATGAAACAGATGCTGCCGGGGATGTTTTAGTCGAAGAATCACGCGAAGAATTGTATGTAAAGCAAGAAGACATTGCACCTTTCGATGAAGATTTGATTGAACATGTCGAAGACGAAATCAGCCCAAAGAAGTTTTGCGATGAAACTGAACCTGAACAGTGGATAACACAACCAAATGAAACCTTGAGTGAAATTGATGAAATAATGGACAATTTCGGCGTTGGACATATTAAAGAGGAGCCGATAATGAATGAAAAAGGAAATTGCAACTTGATGATTGAAGAATTGGATCAAACTGACTCCCAGATAGAAGATCCGAGGCCAAATAAATCTATTCATCGCAACAAAAAGATTACACAATTTTACTGTGAACTATGCCCAAAGACATTCAAAACAACTTCTCACTTTAATGTTCACAAGAAGTCGCATTCAAAGGAAAAGACTTACTCATGCGATATTTGTGGCAAAAGTATGCGATATAAGGGCAATCTTCGAGTTCATATGCGAACAATTCATAAGAACTTTACCAGTGACGATCTCGAAAAATTCGCTCTGAAACTTGATCCCAGTGAATCATCAAGTATTGCTGTATGTCTTAAGTCAATGTCAAATGAGTGCAAAGCCATTACAACAGTTTTCCTCCATGGGAAATGCAAAGTGTTTAAATGTACAGTCTGTGATAAGATTTCAAATTTTAAAGCCACGCACATAGCTCACTGTCGAATTCACTTAAATGAGAAGCCGTTCCGTTGTGAATTTTGTGAAAAGTCCTTCCGCCAATTAGCTACCCTCAAAGAACATGAACTGATACACTTGGGCATACGCAAGTTCAAATGCACTAAGTGCAGTAGCAGTTTTATACAGAGGTCAGCTTTGACTAAGCATGAATTTTGTCACACTGGAAAGAGGCCTTTTGAATGCGAAACATGTGGTTCGACTTTTCGAAGTTCTAGTGATTTAAGGATTCACGTTCGTATCCACGCGGGAGGGCTGCCGTTTTCCTGTGATATGTGTTCTGAAACATTTCGCGAGAAACGGCAAGTAATCAGACATAAGGGAAAACACCATGACCACTGCCGAAGAAGCAGAATACgacaaaaatatttgaagcaGAACTCGACTTTTCGGTCTAAAGCTCTTTTAAACAGCTGTTATACTTCGAACAGCAGAGATTGTGGCCGGGGCACATCCTCCAAGCAAGCGCCAATCAAATATTCAATgtgccaaatatgtgggaagtTGTTTGTAAATTCCGTCGCTTTAGTAAAACATCGTCGTATTCATCTTAACCTACGCCCGTATAAGTGTGCTAATTGCCAGGTGAAGTTTCGTCATCGACACAGTTTGGATTTGCATATGCGGAAGCATACACTGTTGCGAATAGAAATTGTTCCGGTTGTTGAGGGCAATGGTATTATGCATGTCGAAGATGAAACGAAGTTTATTGAAGAAAATGCGAAAGAAATTGCTAGCTTTTGCTGTTCGTATTGCAGTGAAATGTTTCCAAACATGGTTCTTCTCGACAATCATTTAATCTGTTACCACGATGAAATTTAG
- Protein Sequence
- MTELNQTRVQQTCTEICRICGSKENLKHVFQEGTDELLDKIRICANIHIDALDSLPKFVCRDCEEGLEFSYRLRKRGEETEKMLRQELLDSVKIQPCSSDEENETDAAGDVLVEESREELYVKQEDIAPFDEDLIEHVEDEISPKKFCDETEPEQWITQPNETLSEIDEIMDNFGVGHIKEEPIMNEKGNCNLMIEELDQTDSQIEDPRPNKSIHRNKKITQFYCELCPKTFKTTSHFNVHKKSHSKEKTYSCDICGKSMRYKGNLRVHMRTIHKNFTSDDLEKFALKLDPSESSSIAVCLKSMSNECKAITTVFLHGKCKVFKCTVCDKISNFKATHIAHCRIHLNEKPFRCEFCEKSFRQLATLKEHELIHLGIRKFKCTKCSSSFIQRSALTKHEFCHTGKRPFECETCGSTFRSSSDLRIHVRIHAGGLPFSCDMCSETFREKRQVIRHKGKHHDHCRRSRIRQKYLKQNSTFRSKALLNSCYTSNSRDCGRGTSSKQAPIKYSMCQICGKLFVNSVALVKHRRIHLNLRPYKCANCQVKFRHRHSLDLHMRKHTLLRIEIVPVVEGNGIMHVEDETKFIEENAKEIASFCCSYCSEMFPNMVLLDNHLICYHDEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -