Basic Information

Insect: Portevinia maculata
Gene Symbol: PRDM5
Assembly: GCA_949715645.1
Location: OX454526.1:232920960-232923360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.018 7.6 9.7 0.1 2 23 269 291 268 291 0.96

2 10 3.2 1.3e+03 2.6 0.1 6 23 300 317 300 317 0.97

3 10 0.00034 0.14 15.1 1.1 1 23 323 346 323 346 0.96

4 10 1.2e-05 0.005 19.7 2.0 1 23 354 376 354 376 0.98

5 10 3.7e-06 0.0016 21.3 1.1 1 23 384 407 384 407 0.95

6 10 0.33 1.4e+02 5.7 0.1 3 23 415 435 413 435 0.94

7 10 0.0082 3.4 10.8 0.5 2 23 444 465 443 465 0.97

8 10 3.1e-05 0.013 18.4 0.8 1 23 470 493 470 493 0.97

9 10 1.6e-05 0.0069 19.3 2.9 1 23 499 521 499 521 0.98

10 10 7.2e-06 0.003 20.4 5.3 1 23 527 550 527 550 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.018	7.6	9.7	0.1	2	23	269	291	268	291	0.96
2	10	3.2	1.3e+03	2.6	0.1	6	23	300	317	300	317	0.97
3	10	0.00034	0.14	15.1	1.1	1	23	323	346	323	346	0.96
4	10	1.2e-05	0.005	19.7	2.0	1	23	354	376	354	376	0.98
5	10	3.7e-06	0.0016	21.3	1.1	1	23	384	407	384	407	0.95
6	10	0.33	1.4e+02	5.7	0.1	3	23	415	435	413	435	0.94
7	10	0.0082	3.4	10.8	0.5	2	23	444	465	443	465	0.97
8	10	3.1e-05	0.013	18.4	0.8	1	23	470	493	470	493	0.97
9	10	1.6e-05	0.0069	19.3	2.9	1	23	499	521	499	521	0.98
10	10	7.2e-06	0.003	20.4	5.3	1	23	527	550	527	550	0.98

Sequence Information

Coding Sequence: ATGGTTTGTCGTTTGTGTTTAACCGAATCCGACGATGGTATCGCAATATTTAATGACGAACAAATCAGAAAGTACATCAAGAAATTTTTGCTCCTAGAGCTTACTCGGGAAGATAAAGTTTCCAAAGTGATATGCCCTATGTGCTGGACACAATTGAACAATTTTCATAAATTCTGCTTGCGAGTCGAAGAAGCGCAAAAATCGTTGGTCACAGTTTCAGAAGATTTGAAGAACGAATTTAATCAGAATAATTCCGAAGCGGTTGACAATGGCAATGTACAAATTGTTCGTGGGTGTACTGAGTCAAATTTCAATTCACTGAAAAGAGAGGACATTATCGATGAGTCAGATGATGAACCGTTTGACACAAGTGACACATTTCATTGCACATACGTTGAAGTTGTAAAAGCCGAACTTTCAAATAATGAAATCACCCAAGATGCCACTATTGCTCCATCTGAAACCGATGAGCCACGTTCTACACGTAGAATCACCAGAGCATCGAAATATCACAAGCAATCAACACCCGAAAGAGACACCTGTGTCGACATAAATGCAAAAAGAAAATGCGGTCGGCCCGGAAAAAAACAAGTGCTAGAAACAGCCAAAACAGATGAAACATCACAAGCGATCGCAACACTCGAACAAGACACCATTCCAGACAAGAATGCGAAAAAACGCCGCGGCCGGCCAAAGAAGGGAGAAGAACGACCCAAACTGGAAAAGATCAGATCAGAGAAAAGCGAAAGAATTCTGGAGACTGCCAAAGAATTTGATGATATTATCCAGAAAAATATGAATCTAGTCTGCAATGTGTGTTCGGCAGGTCTGATCGATTTTGCCGAGTTGAAACGGCACTTCCGAACCATTCACAATCGAAAAGGCTACGCGGTGTGTTGCAACAAACGATTGTATAAGCGTGGCCTAGTTGTCGATCACATAAACACGCACAATAATCCGGAGTATTTCAAATGCACTGTGTGTGGAAAAGTTATGGCGGATAGGATGTGCCTTCGGAATCACATGCTGTTAATGCACCAGAACGAGGACGATAAACTGTATCAATGCCCATACTGCCCTAAAAAGTACGCCAAACAATATCTTCTGGTCCATCACCAAGTGAAACATGTTCCACAGGCAGAGTGCACCTTCTTTTGCAAAGAATGCGGTAGAGGGTTCCCTACGAAGACAACACTTACAAAGCACTTGAATCAGATTCACTCTACCTTGTATGATAAAATGTGTGAAATTTGCGCTAAACTTATCCGAGGCAATGCGGCTTTCGAGCGTCACATGGAAGAACACGAGGGGATAGTTCGACCGCAGGTTCAGTGCGAGATTTGCGGATCGTGGTTGAAGGACAAAAATAGCCTGCGAAAACATATGTATAAGCATGATGGTAAGTCGTACTCCTGCAGTATATGTGGCAAGAATGCACCTTCAAAAAGCGCTCTGCAAAGTCATCACAGATATGTGCATCAAACTGTGCGTCAGTTCCACTGCACTTTCTGTGACAAGGCTTTTAAGAAGGCTGTCAATTTGAGGGAACACTTGACAACCCACACCGGAGAAGTGCTGTACACCTGTCCGCATTGtccaaaaacatttaattccAAGGCCAATATGCATGCTCATCGCAAGAAGAAGCATCGCGAGGAATGGGAAGCTAACAGGCGTTACAATGTAAAACAAGTGACgtcaacagaaacaaattcaattttagaATAA
Protein Sequence: MVCRLCLTESDDGIAIFNDEQIRKYIKKFLLLELTREDKVSKVICPMCWTQLNNFHKFCLRVEEAQKSLVTVSEDLKNEFNQNNSEAVDNGNVQIVRGCTESNFNSLKREDIIDESDDEPFDTSDTFHCTYVEVVKAELSNNEITQDATIAPSETDEPRSTRRITRASKYHKQSTPERDTCVDINAKRKCGRPGKKQVLETAKTDETSQAIATLEQDTIPDKNAKKRRGRPKKGEERPKLEKIRSEKSERILETAKEFDDIIQKNMNLVCNVCSAGLIDFAELKRHFRTIHNRKGYAVCCNKRLYKRGLVVDHINTHNNPEYFKCTVCGKVMADRMCLRNHMLLMHQNEDDKLYQCPYCPKKYAKQYLLVHHQVKHVPQAECTFFCKECGRGFPTKTTLTKHLNQIHSTLYDKMCEICAKLIRGNAAFERHMEEHEGIVRPQVQCEICGSWLKDKNSLRKHMYKHDGKSYSCSICGKNAPSKSALQSHHRYVHQTVRQFHCTFCDKAFKKAVNLREHLTTHTGEVLYTCPHCPKTFNSKANMHAHRKKKHREEWEANRRYNVKQVTSTETNSILE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -