Basic Information

Insect: Portevinia maculata
Gene Symbol: -
Assembly: GCA_949715645.1
Location: OX454526.1:302150178-302152239[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.52 2.2e+02 5.1 0.2 1 23 181 206 181 206 0.92

2 12 0.00033 0.14 15.2 2.8 3 23 214 234 212 234 0.98

3 12 2.1 8.9e+02 3.2 3.3 2 12 269 279 269 292 0.80

4 12 2.4e-05 0.01 18.7 3.3 1 23 298 320 298 320 0.99

5 12 0.00027 0.11 15.4 2.5 3 23 328 348 326 348 0.97

6 12 3.7e-05 0.016 18.2 3.9 2 23 354 375 353 375 0.97

7 12 0.0044 1.8 11.6 5.2 3 23 384 405 383 405 0.88

8 12 0.00018 0.076 16.0 2.4 1 23 430 452 430 452 0.99

9 12 0.00023 0.097 15.7 6.7 1 23 458 481 458 481 0.96

10 12 0.00014 0.059 16.3 1.5 1 23 487 510 487 510 0.96

11 12 4.5e-06 0.0019 21.1 0.5 1 23 516 538 516 538 0.99

12 12 1e-05 0.0042 20.0 0.7 1 23 544 566 544 566 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.52	2.2e+02	5.1	0.2	1	23	181	206	181	206	0.92
2	12	0.00033	0.14	15.2	2.8	3	23	214	234	212	234	0.98
3	12	2.1	8.9e+02	3.2	3.3	2	12	269	279	269	292	0.80
4	12	2.4e-05	0.01	18.7	3.3	1	23	298	320	298	320	0.99
5	12	0.00027	0.11	15.4	2.5	3	23	328	348	326	348	0.97
6	12	3.7e-05	0.016	18.2	3.9	2	23	354	375	353	375	0.97
7	12	0.0044	1.8	11.6	5.2	3	23	384	405	383	405	0.88
8	12	0.00018	0.076	16.0	2.4	1	23	430	452	430	452	0.99
9	12	0.00023	0.097	15.7	6.7	1	23	458	481	458	481	0.96
10	12	0.00014	0.059	16.3	1.5	1	23	487	510	487	510	0.96
11	12	4.5e-06	0.0019	21.1	0.5	1	23	516	538	516	538	0.99
12	12	1e-05	0.0042	20.0	0.7	1	23	544	566	544	566	0.99

Sequence Information

Coding Sequence: ATGAGTGTTATGGAAAATACTTGCAGAACATGTGGAAAACAATCCGACCAGGAAAATAATTCGGATCTCTGTCCAGTGTTTAATTCAAAAGACTACCAATACGAACTGCAAATGGTTCAACAAGAGTTCGAAATGTGGAATCTAAACATTGCACAAAATGATGGCCTACCTCAGAAGATTTGCTTAACTTGTTTCGATAGCTTCTGTCAGATTCATAACTTCCGGATGATATGCCAAGAGGCGCAGACGAATTTTGGTGAGCTATGCACCGGTCTGGATATCATAATCAAGTCCGATCCCGAGTACGGTGATCTTGATGTAGATTTTCCCGAAGATTTCGAAGGCGAGCAAACGATAACTGTTGAAGAACACTATCAATTTCCCGTCGATGAGCTGTCAAAATCATCAAATTTACCTGTGGAACAGAAAACATATGAAAAACTTTATGAGAGAGTCAATTCGGACGATGAGAGTCGTAAAGAGAGAGACCGCCTCGATGCGCTAGAAGAATTAAACGCAGAACTTCCCGAGTTTAAGAAATATCAGTGCGAATTCTGCTTCGACGTTATAGGCTTTGATGATTCCGAGCTCTTAAATCAGCATTACAATGATCTGCATGCTTCAGACCTGCCCTACGGATGCCCCAAGTGTGAGAAGTGCTTTGACAGCAAGAGTAAACGAAACAGCCACGTTCGAGTTCATTATCGGGTCGTGGTCAACTGCACCAGTTGCGGTAAAAAGGTTCGAGGTGGCAAGCGAATGATGGCGATGCACAATGAGTTGCATCACATCACCAAAGATAGGGAATGCCCAACATGCAACAAAAAGTTCATTAATATTACGTTGAAGAGATTGAACTATCACATGAGCTGGCATGACGACACCAAACTGTACAAGTGCAAGTATTGCGAAAAAAAATTTGTCCAGGGAACTCATTTATTAGTACACGAGAGGACTCATACTGGCGAGAATTCCTGTCTCTGCACTGAATGTGGGATGGGATTCAAACATACTGGCGCCCTTTACACGCACATGAAAATACATGGATTGGGTGAGCTTACCTGTACTATATGCAGTAAAACATTCTTTCACCCACATGGATTGCGGCTGCACATGCAAATGCATGAACAGAACAGAGGAAAAGCGCACTGCGATATTTGTCACAAGTCCTTTACTACGGCGATGAGTCTCCGTTTACACAATCACCAACTTCATGGAGCGCCGGCTTCTCAGGCAATTATCAACGTTTTGAGCAAACGCAAAATAAGAGCGAAATATATAAAGCCCTACAAATGCACCAAGTGTCCCATGTCATTTGTATTACACACACAAATGGAAAGGCATTTAAAAGTCCACGACGAGTACAGACCGCATACCTGTAATCAATGCCATAAGACTTTCAAACGCGATGCTCATCTGAAGTTACATGTTAATTCGATACACCTGAATAAGAAGCCACACAAGTGCGCCACATGTGGATGGGGATTTACCCAGATAAATCATCTCAAAGAGCATATTGCCTCTAAGCATGAGGATACAAGAGACTTCAAATGTGAAGTGTGTGGAAAGGCGTTCGCCACAGGTAAAGTGCTGAGGTATCATATGCGGAAACACACTGAAAAAAATCCATATAAATGCACGATATGTAAAAAGAGCTTCGGCGCATTGATTTCCctgaaaaATCACATTAATACTCATTTGAGAAAAAACGAAATTGATGTGGCTGGAGGGGCTATTGCAGATGCTATTATTATAGCGAATTGA
Protein Sequence: MSVMENTCRTCGKQSDQENNSDLCPVFNSKDYQYELQMVQQEFEMWNLNIAQNDGLPQKICLTCFDSFCQIHNFRMICQEAQTNFGELCTGLDIIIKSDPEYGDLDVDFPEDFEGEQTITVEEHYQFPVDELSKSSNLPVEQKTYEKLYERVNSDDESRKERDRLDALEELNAELPEFKKYQCEFCFDVIGFDDSELLNQHYNDLHASDLPYGCPKCEKCFDSKSKRNSHVRVHYRVVVNCTSCGKKVRGGKRMMAMHNELHHITKDRECPTCNKKFINITLKRLNYHMSWHDDTKLYKCKYCEKKFVQGTHLLVHERTHTGENSCLCTECGMGFKHTGALYTHMKIHGLGELTCTICSKTFFHPHGLRLHMQMHEQNRGKAHCDICHKSFTTAMSLRLHNHQLHGAPASQAIINVLSKRKIRAKYIKPYKCTKCPMSFVLHTQMERHLKVHDEYRPHTCNQCHKTFKRDAHLKLHVNSIHLNKKPHKCATCGWGFTQINHLKEHIASKHEDTRDFKCEVCGKAFATGKVLRYHMRKHTEKNPYKCTICKKSFGALISLKNHINTHLRKNEIDVAGGAIADAIIIAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00725020;
90% Identity: -
80% Identity: -