Pmac081450.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454527.1:184843971-184850025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.078 15.9 0.5 2 23 90 112 90 112 0.93 2 12 0.011 4.7 10.3 0.8 1 23 123 146 123 146 0.95 3 12 0.00073 0.31 14.1 3.9 1 21 152 172 152 173 0.95 4 12 0.12 49 7.2 0.1 1 20 213 232 213 235 0.89 5 12 0.44 1.8e+02 5.3 0.1 2 12 239 249 238 256 0.93 6 12 0.0002 0.083 15.9 0.3 1 23 266 288 266 288 0.98 7 12 0.4 1.7e+02 5.5 0.7 1 23 417 442 417 442 0.91 8 12 0.0022 0.9 12.6 0.1 1 23 449 471 449 471 0.98 9 12 0.00045 0.19 14.7 1.6 1 23 476 498 476 498 0.99 10 12 1.5e-07 6.2e-05 25.7 1.3 1 23 504 526 504 526 0.99 11 12 0.001 0.44 13.6 2.5 1 23 532 554 532 554 0.99 12 12 0.0039 1.6 11.8 0.7 2 21 561 580 560 581 0.95
Sequence Information
- Coding Sequence
- ATGGACGACAAACTACCGCGTAACATCTGCAACAACTGCCTGCAAGCTGTTGAGGCGGCTTTTGCCTTTCGCACTCAAAGCCAGCGAATTGATGATGTTCTCAAAGGATTCCTTCCCAGAAAGGAAGAAATAGTTACTGCAACAGAATGCACAGCCGAGGTGGTCCCCCTTGAATCGGAGCGGACTGAAGTTATAGAAGTCCATCATAAAATCAACGACAGTCAGGTTTCGTTTGTTATAAATTGTCTCACAGATCCCTCCAACGAACAGtgcaatatttgcaatatgACTTTTCCCAACCACACAGATCTTGTAAACCATATAGCTGAAAATCACTCGAACCCGAGCACTAGTAAGAGAAAACTTTTCAAGTGCGGACTTTGCGCAAGGGAGTTTTATTTTCGGAATGGACTGCACAATCATATGGTGGTCGCCCATTTACAAAAGAAAGAATTCAAGTGCAGCGTCTGCTTCAGGAAATTTAAGAAGAGGGATAAATTGGAGCGACATAAGAAACGATTTTGTGTCCCACAAAGTGCAGTAAAAAGACGGTTGAAAAATGGACCGGCCAAAGTCACACTACATCCGGTTGCAGAGAATGAAACGCCCGATGACAAGCACATTGAGATCACAAATTTTTCATGTTCTCTGTGCGACGAGACGTTTGAACTGGAAATTGAATTCCTCAACCACCTGCCGGAGCACAAGTCGAAAAAATGTCCGCTCTGTAAACAAATGTTTTCTAGAGTGATAATTTTAGAGGGCCATGTATGGAGTCACGGCTGCGAGAGACCTTACGTGTGTCCCCACTGCTTGAAGGGTTTTAGAACTACTCCGGGACTGCGGGGTCATATCAAAGGTCACAAGGAAATGCGAACGTTCACTGACTTGCAAAAACCCAAACCGATGCTGGGTGTTTTGCGTGAAGACGAAGTATTTGTGAAATCAGAAAAGTTCATTGTTCGTGAGTTGAAAACGGAACCCGACCTTGATCTAAACGAACCCGATTTGTCCATCCCGCCTGAATGGAAGAATGATTATAAAAAGAGTAAAGAAACGGATGACGTACAAGTGCAACCAGTTCCTCTGCATGCTCTAGCAGAACTACCCGTCGAGATTAAACAAGAAATATTAGACGATTCCCAGTTGAACAACACTACTAATGAACCGCTTAGCAATGAAGAACCATCATCAGATCAGTTCGAAGAAGACACAATAGAAGCAATGGATACCAAACAATTTACCAGGTTCACATGTGAGGTTATTGGCTGCAAAATGGAATTCAAGTACTATACTGGCATGATCAACCACTATACCTTTCAGCACTGTCGAGGGCGGCCGCCGTTTAAGTGTCCCGTATGTTCTACGGAATTTCCTGGCAAACTGGATGTACGCGAGCACGTAAGATCGCATTTAAAATGCGAATACAAGTGCCCGTTCTGTGTTCGGGTACACTCGCAGTTGTTTGAATTAAATGCGCACATGCGCACCCACACTGGCGAACGACCGTTCAAGTGCCCACAGTGTCCGAAGACGTTTAAGCAACGAGCAGCACTCCGAGTGCACAAAAAAACACATAACACTAGCAAAGAATTCAAGTGTCAAATTTGCAGCAAAGAATTCTTTTCGTATAATGGAATGTTTCTGCACATGAAGAGCCACGAAGTTAACACTGACCTACAGTGCGAGTTCTGCAAACGACAATTTCCGATCAAGAGTCGCTTGCAACGACACCAAAAAGGCATTTGCAAACTTCgcgataaaaaaatgaaaatatctcCTAATACGTTTTTGACTTAG
- Protein Sequence
- MDDKLPRNICNNCLQAVEAAFAFRTQSQRIDDVLKGFLPRKEEIVTATECTAEVVPLESERTEVIEVHHKINDSQVSFVINCLTDPSNEQCNICNMTFPNHTDLVNHIAENHSNPSTSKRKLFKCGLCAREFYFRNGLHNHMVVAHLQKKEFKCSVCFRKFKKRDKLERHKKRFCVPQSAVKRRLKNGPAKVTLHPVAENETPDDKHIEITNFSCSLCDETFELEIEFLNHLPEHKSKKCPLCKQMFSRVIILEGHVWSHGCERPYVCPHCLKGFRTTPGLRGHIKGHKEMRTFTDLQKPKPMLGVLREDEVFVKSEKFIVRELKTEPDLDLNEPDLSIPPEWKNDYKKSKETDDVQVQPVPLHALAELPVEIKQEILDDSQLNNTTNEPLSNEEPSSDQFEEDTIEAMDTKQFTRFTCEVIGCKMEFKYYTGMINHYTFQHCRGRPPFKCPVCSTEFPGKLDVREHVRSHLKCEYKCPFCVRVHSQLFELNAHMRTHTGERPFKCPQCPKTFKQRAALRVHKKTHNTSKEFKCQICSKEFFSYNGMFLHMKSHEVNTDLQCEFCKRQFPIKSRLQRHQKGICKLRDKKMKISPNTFLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -