Pmac059551.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- TIGD2
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:265395752-265401983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0056 2.4 11.3 0.7 1 23 707 730 707 730 0.97 2 9 0.13 53 7.0 0.2 6 23 739 756 739 756 0.99 3 9 0.0021 0.88 12.6 1.7 1 23 762 784 762 784 0.98 4 9 6e-06 0.0025 20.7 1.8 1 23 792 814 792 814 0.99 5 9 5e-06 0.0021 20.9 0.2 2 23 821 843 820 843 0.95 6 9 1.7e-06 0.00072 22.4 0.5 3 23 851 871 850 871 0.96 7 9 0.0011 0.47 13.5 0.3 2 23 880 902 879 902 0.95 8 9 0.00017 0.073 16.0 0.0 1 23 909 932 909 932 0.94 9 9 0.014 5.7 10.1 0.2 2 17 939 954 938 955 0.89
Sequence Information
- Coding Sequence
- ATGTTGGCTAAAAGATATAAAATCGGCACCCAAACAGTGTATgatattctaaaaaataaagacaagattttcaaatttttcgcagACAGCTTCACTATAAAAGGATTGGAGAGGCGCAAAACTCTCAAAAAAGCTGAAAATCCCAAAGTGGACGCAGCAACGTATGAATGGTTTCGACAGGAACGATTTCGAGGAGTTCCAATTTCTGGGCAAATGATAATGGAGAAAGCAACATTTTTTCATGAAAATCTTAACATAGCCTCTGACTGTGTATACTCTGAAGGATGgctgggaaaattcaaaaaccgcCACGGAATTCATGGATTGAAAGCGATAGGGGAAAAAGAATCTGCTGAGTACGAAGCTGCTACGCTTTTTGTAGAAGAATTGCCTGATCTCATTCAAACAGAGAATTTAAGCAATGAGCAAATTTACAATGCTGATGAAAccagccttttttggaaatgtttgcCCCAAAACACTTTGGCAAGCAACGACGAGCGTTCAGTTGAAGGATATAAGGAATCGAAGGAACGACTCACTGTACTGGTTTGTTCTAATGCTTCAGGAactcataaatgcaagttgatggtTATTGGCAAAAGCGCTCGTCCAAGAGCTTTAAAAAATGCTGGAGAGCTTCCAGTTATCTACAAAGCCAACAAGCGGGCTTGGGTAACCCACAAATTGTTCCTTGAttggtttaataaaaactttgtcccGGAAGTTAAAGAGCACCGGGAAAAAAACCATCTTGACAGGAACTCCAAAATTGTATTGCTCTTGTATAATTGTCCAGCCCACCCAGACGTTAATGATTTTAAAGCCGCAAATATACTAGTGGGGTACTTTCCACCAAACTGCACTTCTCTGATCCAGCCAATGGACCAAGGCGTGATTCGAAGCCTAAAGTGCCATTATCGCAAAGAGATTATTCGAAAGCTAGTAAGCTCAGAAAACAGGATCAACTTTTTTAAGTCATTTAACATCAAGAATGCTTTATGGGGTGTTTCTAAGTCTTGGAATTTCGTTACCACcgaggttttgaaaaatgtttggcacaattTACTCTGTCCCGAAAATGAGGAAGAAGAACAAGATGCCATTGACGAGGTTTCAACAATTATGGAAGTCGCAGAGGATTTTGATGTCAATGCAATAAGAAATTGGGTGGACTCAGATGCGAATGCTTCACCATTTGCTGTTTTATCAGAGAACGAAATTATGGAGATGATAAATAACCCTCTTGACAACGAGCCGGAAGTCCTTACTGATGAATCCGATGatgtagaaatttcaaaaattccaattGTTGATGCGATTAAGGCAAGTTCTACACTTTTGAGCTTTTTAGAAGAGTCGAATTGTCCTGGAATAGCACAACAGGATATAATGCAACCAAAACCGAATGATGTGAATGCAAATGTTATATGTGCGTCCTGTTGGGAGGCATTAAACTCTTTTCATAAATTTTATCTGCAAGTCGAGGAATCTCATCTCAGATTGCAAAATGCCAAAGCCATCGACGAAGATGGCTTGAAGCTTGAAACCGAAATTGCGCAAGTTCTCAATTCACCGAGTGTTGAACCATTTACTGTTGTTGCTGCGGAATTGTTGAAAGAAGATATAAAAGAGGAAGTTAAAGAAGACACCGATGCGGCCTTGCCACCGGGTGCTCTATCTGAGAGCGAAAGAAATTTAGAATCTGCACCTGATTCCACTGACTTTAAAAATTCTCTTGATCATGAAACCCTACCCGCTTGCTCCACGCGAAGTCGTATTACTGTAGAAAAGGTTTACGCTGAAAGCGATTCTTCCAGTAACAGTAAGGTAGATGTTAAAGACTATGACACTGTATCACAAAACACACCACCAGCCTGGCATGAACAGAAATCAGACATtgacgacgacgatgacgatgaagACAGTGACTACGAGGAGAGCTCGCCAAAATCAAAAGCGAAGAAGAATGTTCCTCCAAAAGCAGCGATAAAGCGTCTTCGTCAAAAGAAAGTTGAACCCAAGAACCCACCGTGCAAGAAGAAACGAACAACAGAAGAGAAGTCTAAGAAAATTGACCGCATAGAGTACGACGAATTGGTTGCCAAAAACATGAAGTTCTCGTGTGATATCTGCTCAGGGACCTTCACGAACTTTGCTATATTGAAGCGGCACTATCGTTCCATTCACAATGAATGCGGGTATGCAACTTGCTGTGGCAAAAAGTTTCGTAAACGCGGTGTCTTCGTCGACCACATTTACACTCATAAAAACCCGGAGTACTTTAAGTGTGAAAAATGTGGCAAAGTTTTGGCCAACCGCAATGGGCTCTATTGTCACATGCTAACCCACGACACAGAGAAGCGGCGCACTTATCAGTGTGACCAGTGCACGATGAGTTTCTATAGAAAGCCGTTGTTAACACGCCACTTGCAAACGCACATTTCCGAGCGCAATATCAAGTGTCCCGATTGCGACAAGTCCTTTTCGACCCAAGATATATTGCGAACGCATATTAATAATGTTCACAACGCAGCGTACACCAGGATCTGCGATCAGTGTGGAAAGTCATTCCGTCGGCCGGACGCATTTCGCAAGCATCAGCTGGAACACGATGGCATAACGCAGCCACTTGTTCCATGTGAAAAGTGCAGCGTGAAACTGACCAGCAAATATGGTCTCAAGCGGCACATGGAATCAATACATCCTGAAACTGTAATAAAATATGAGTGCAGCGAATGCGGCAAAATTGCACCCAGTGCATCGGCGTTGCAGCGTCATGTCTCGTATGTGCACAAAATGGAACGCAAATTAAAGTGTCCCATGTGCGATAAGGCATTCAAAAAGACCGACGGACTTAAGTTGATTTACATGGCCACGTATTTGCCGCGGGTGCTTGGAGCAAGGATGCATGTTCAAATCGCATTAGTATAG
- Protein Sequence
- MLAKRYKIGTQTVYDILKNKDKIFKFFADSFTIKGLERRKTLKKAENPKVDAATYEWFRQERFRGVPISGQMIMEKATFFHENLNIASDCVYSEGWLGKFKNRHGIHGLKAIGEKESAEYEAATLFVEELPDLIQTENLSNEQIYNADETSLFWKCLPQNTLASNDERSVEGYKESKERLTVLVCSNASGTHKCKLMVIGKSARPRALKNAGELPVIYKANKRAWVTHKLFLDWFNKNFVPEVKEHREKNHLDRNSKIVLLLYNCPAHPDVNDFKAANILVGYFPPNCTSLIQPMDQGVIRSLKCHYRKEIIRKLVSSENRINFFKSFNIKNALWGVSKSWNFVTTEVLKNVWHNLLCPENEEEEQDAIDEVSTIMEVAEDFDVNAIRNWVDSDANASPFAVLSENEIMEMINNPLDNEPEVLTDESDDVEISKIPIVDAIKASSTLLSFLEESNCPGIAQQDIMQPKPNDVNANVICASCWEALNSFHKFYLQVEESHLRLQNAKAIDEDGLKLETEIAQVLNSPSVEPFTVVAAELLKEDIKEEVKEDTDAALPPGALSESERNLESAPDSTDFKNSLDHETLPACSTRSRITVEKVYAESDSSSNSKVDVKDYDTVSQNTPPAWHEQKSDIDDDDDDEDSDYEESSPKSKAKKNVPPKAAIKRLRQKKVEPKNPPCKKKRTTEEKSKKIDRIEYDELVAKNMKFSCDICSGTFTNFAILKRHYRSIHNECGYATCCGKKFRKRGVFVDHIYTHKNPEYFKCEKCGKVLANRNGLYCHMLTHDTEKRRTYQCDQCTMSFYRKPLLTRHLQTHISERNIKCPDCDKSFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRKHQLEHDGITQPLVPCEKCSVKLTSKYGLKRHMESIHPETVIKYECSECGKIAPSASALQRHVSYVHKMERKLKCPMCDKAFKKTDGLKLIYMATYLPRVLGARMHVQIALV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -