Pmac029463.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949715645.1
- Location
- OX454525.1:344398858-344419087[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 10 9.3 2.3 1 20 134 153 134 155 0.93 2 13 4.6e-06 0.0019 21.0 0.5 3 23 206 227 204 227 0.92 3 13 0.0021 0.88 12.6 0.1 1 23 233 255 233 255 0.97 4 13 3.9e-05 0.016 18.1 4.7 1 21 262 282 262 283 0.94 5 13 1e-05 0.0043 19.9 1.3 2 23 295 316 294 316 0.97 6 13 0.00018 0.076 16.0 6.2 1 23 327 349 327 349 0.99 7 13 6.7e-05 0.028 17.3 0.6 1 23 355 377 355 377 0.97 8 13 5.2e-06 0.0022 20.8 0.3 1 23 383 405 383 405 0.99 9 13 6.5e-06 0.0027 20.5 4.6 1 23 411 433 411 433 0.98 10 13 0.0075 3.2 10.9 4.0 1 23 437 459 437 459 0.98 11 13 0.67 2.8e+02 4.8 2.7 3 22 471 490 470 493 0.89 12 13 3.6 1.5e+03 2.5 0.8 2 23 500 522 499 522 0.93 13 13 0.0022 0.92 12.6 1.2 1 23 527 550 527 550 0.96
Sequence Information
- Coding Sequence
- ATGATCGCTACCGGAGAGGTTGTACGAGATATTCCAGCTGGTTTTGGGGAGGAGGGAAGGTCTTCGAAACGAGCAGCATCTTCGAATCGAAACAATGGCTCGCTTCTTCTGAATGCCACGAATCGGCCAACTAAGCTTGCAAAGAAAAATGAACCAgaattacaaataaaaagtgTGGAAAGTGAGCCACCAGAACCAACAGATCACTACCTTATAACGGAGATAAAAGGTGATGCGGAGAATGAGATTGACTTTGTGCTTACGGAAGATCGATTTGTTAGTGAAAGTGGCCCTCCGGCGGAGTGTCTAGAAGAGATTCACTATGACGAGCTTCATGTGGACGAAAGTGAAAATGTGGGGGACACCGATGACAACGTAGACGTACGGGAGATTATCGAGCATGTATGTGGAAAGTGCTTCAAATCTTTTCGATTGATAAAGgcaTTAAAGCATCACCTGTCCTACTGCGTCTTTAATAGTGAAATGGTCTTGCGGAGAGAAGAAATGTTAAAGAacatcaaaaaaatcgaaaaggAAGCAGTTATTATGGAAAAGAAGGACACGTGCTTCTGCTGCGGCGATAGCTACGACACCTGtcacTTGGGCCACATTAACTGCACTGAATGTCCGAAAACCTTTAAAACGCAAATTACCCTGGAACGTCATATGTTTCTAATTCATTCCGAAAGTCACGATTTCCCTTGTACCATCTGCAATGCTCGCATCCGAACGGAATCTCTCTTGAAGTTGCATATCGAACAGCATAAAAATCGCGGCAAACCATTTGCCTGCAAGTCATGTGGGAAGGATTTTACGCGACAGTACCACTTGAAGCGACATCACAAATATTCATCGTGTGGTGACGGTCAAGCTGAAATTATGAGTTGTAAAGTTTGTAACAAAGAGTTCTTTCGATTGGATAATTTGCGCGTGCATCTGAAGTCACACTTGGGCCACGGAACGCCGAAGAAAGCTGAGTATACGTGTCCATGCTGTAAGAAATGCTTCTACAGTTTATCGACGCTTAACATTCATATTCGAACTCATACTGGCGAGCGGCCTTTTGATTGCGATCTTTGTGAAAAGAATTTTCCATCGCTGGTCGCATTGAAGAAGCACAGGAGATATCACACTGGCGAAAAACCATATACATGCGAAGTGtgtgGCCAAAACTTTGCCGTCAAAGAAGTCCTTAACAGACATATGAAACGACACACCGGTGAAAAGCCACACGTTTGTGTACACTGCAATAAACGATTTATCCAAGCAACGCAGTTGAAAAACCATTTGCGAACACATGAAAGACCGTTCGAATGCACTCAGTGTTCTGATAAGTTCAAAACAGAAAAGCAATTTGAGAAACACTACAAGTCACACTCAAGGCAAGGAATTAGAAAGATCAGGAACCACTGCGAAGATTGTAAATTGGAGTTTAGCTGTAAGGCGGCCCTTATAAAGCATGAAAAGTCCGCTAAGCACATTGAAAACTCAACCAAATCGTGTCTTGAATGTGGCGTCCAATGTATGGATCTGAATGCCTTACAATTCCATATGCTTAAAGACCATGAGACCTCTGAATACGTGTGTAAGAGCTGCGGCGTGGTCTTTGACAAATATCATTTGTTACATGAGCATATAGTAACTGCCCACGACAGCAATTTGCCTAACCCAGCTGTCCTTCAAGATAAGAAAGCGGTTGAAGTAGAAGCAGTTAAGACCGAACAAGATGAATGTATAGTTATTGAGGAATTTATCGTAGAGTCTTTTGCAACGGAAAAAGATGTGCACGGAAGTGATCAAACGACATTCACTGTAATTGCCAAGAATAACGAGGTATCGCCAGACTTCAAAAAAGTCACAAAAGAGACGATAAAGAAATCCCAAACTCTCAGATCGGAACTGAAAAAGTCCCTAACGAACTGTTTGCAGGATGAACCTGccaaaaaaatcatcgaaaccATGAGTGCCGAGGACGAGGAAATCAGaaaaaatgttggtaaattGCTAGATATGCTAGTGGATGTAGAAACCCTAAGTAAATTTGGCTGGCCAGAGGATACTGTTGAAAACGTTCTTTGCAAGGTAATTGAAAACTGTGGGTATAATTTGTACAAGACAAAGTTTACCGAAGAGTATGGGACAAGGATGAGGGAATTTGTCAAACTGCTGTTCACCGTGGTCATTCAAAATGATTCCATCAAAGAACTCCTGAACAATTATCCAATCGATGAggttattgagtttgttctctCCAATGACGACGATTAA
- Protein Sequence
- MIATGEVVRDIPAGFGEEGRSSKRAASSNRNNGSLLLNATNRPTKLAKKNEPELQIKSVESEPPEPTDHYLITEIKGDAENEIDFVLTEDRFVSESGPPAECLEEIHYDELHVDESENVGDTDDNVDVREIIEHVCGKCFKSFRLIKALKHHLSYCVFNSEMVLRREEMLKNIKKIEKEAVIMEKKDTCFCCGDSYDTCHLGHINCTECPKTFKTQITLERHMFLIHSESHDFPCTICNARIRTESLLKLHIEQHKNRGKPFACKSCGKDFTRQYHLKRHHKYSSCGDGQAEIMSCKVCNKEFFRLDNLRVHLKSHLGHGTPKKAEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCEKNFPSLVALKKHRRYHTGEKPYTCEVCGQNFAVKEVLNRHMKRHTGEKPHVCVHCNKRFIQATQLKNHLRTHERPFECTQCSDKFKTEKQFEKHYKSHSRQGIRKIRNHCEDCKLEFSCKAALIKHEKSAKHIENSTKSCLECGVQCMDLNALQFHMLKDHETSEYVCKSCGVVFDKYHLLHEHIVTAHDSNLPNPAVLQDKKAVEVEAVKTEQDECIVIEEFIVESFATEKDVHGSDQTTFTVIAKNNEVSPDFKKVTKETIKKSQTLRSELKKSLTNCLQDEPAKKIIETMSAEDEEIRKNVGKLLDMLVDVETLSKFGWPEDTVENVLCKVIENCGYNLYKTKFTEEYGTRMREFVKLLFTVVIQNDSIKELLNNYPIDEVIEFVLSNDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -