Pmac085497.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454528.1:8920642-8926718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0016 0.65 13.1 0.3 2 23 53 74 52 74 0.97 2 16 0.00053 0.22 14.5 0.1 3 23 108 129 106 129 0.93 3 16 0.00055 0.23 14.5 0.1 1 21 137 157 137 158 0.94 4 16 7.1e-05 0.03 17.3 1.7 1 23 166 188 166 188 0.98 5 16 0.0047 2 11.5 1.5 1 23 194 216 194 216 0.97 6 16 3.3e-05 0.014 18.3 3.9 1 23 222 244 222 244 0.98 7 16 1 4.4e+02 4.2 4.7 2 22 251 271 250 271 0.93 8 16 2.6 1.1e+03 2.9 1.9 1 23 522 545 522 545 0.95 9 16 0.78 3.2e+02 4.6 1.5 2 23 570 591 569 591 0.93 10 16 0.73 3e+02 4.7 5.2 1 23 599 623 599 623 0.95 11 16 0.00039 0.16 14.9 0.6 2 23 628 649 627 649 0.97 12 16 0.00028 0.12 15.4 0.5 2 22 661 681 660 681 0.93 13 16 0.0012 0.51 13.4 0.4 1 23 689 711 689 711 0.93 14 16 4.9e-07 0.0002 24.1 2.4 1 23 717 740 717 740 0.98 15 16 7.4e-05 0.031 17.2 0.3 1 23 746 768 746 768 0.98 16 16 0.00049 0.2 14.6 0.6 1 21 774 794 774 795 0.94
Sequence Information
- Coding Sequence
- ATGAAAGATACGGTATCCACAGGAACAGGCGGAATGCTGAGCTCACCATCCCTCACCCTGGTTTTCTACGCGTTTAATTTCATCGAAATAATGATCGCTGGCGAAGTCTCCACAATGTTGGTGCAAATTAAAACAGACAAATCTGGTCCGAAACTAGTTTGCCCAGTGTGCAACAAGAGTCTGATGTCTCTGAATGGCTACATGACCCACATGAAGCGTCACGAACCACCAGGCGGATTCTGTTGCAACTTTTGTGACGATCGCTTCTGTCTCGATGAACTTCTTAAGAAGCACAAGGACGAGAAGCATAAAGTGCTCGCCTGTCAGATATGCCATGAAACATTCCCCAACGCAGACGCATACCGCATGCATATTCAGGATATTCACAAAGGAGTGGACCGTCAAATGTACGTATGTGAAGAGTGCGGAATGGAGTTTAAGACCTCTCAGGCGGCCAAAAGGCACAGGGAAACAAAATGCGGCGAAATAAAGGCGCATAAATGTGATGAATGCAGCATAGCATTCTATACAAAGTACAACTTGGCCGAACACAAGAAGATTCACCGCGGGGATAAGAAGTTCTGCTGCAGCTACTGCGGCAAGGGCTTTCTCAACAATGGCAGACTGGTGATACACGAGCGGAGTCATACTGGAGAGAAGCCATATAAATGTGATGTCTGTGGAAAATGCTTTGCACATCGCGAGAGTTTCGTTACTCATACGTCGATTCATACAGGAGTCAAGCTAGTTGTATGCAAGTGCTGTGGGGCACGGTTTTCGTGTCATTCGAATCTAATTAAGCACCGAAGAACGAGGCAGGATACATGTGGTCAGGCCATATACGATTCGACCAAGGAAAGGAAACGGAACGGGAATTCAAGAATTCCAGCAAGTCTAATGTTGTCAGAGATCAAAATTGTGCAAGCTAGCAAAGTACTAAACCCCAACGAGGAGCCGAAAAACACCAGGCCTTCCAAAGTCCCCAAAGCATCTAAAGCTCCCAAAACACCCAAGCCTCCCAAAGCTGCAAAGACTTTGAAAACAAACTTAGCCAAATACGCGTCCAGCTCAGACACAGACGAAGTGATAATCAAACGTCCAAGGCGAAGCCAACGAACGATAGGACAAcccaaaatcgatgaaaagccACCCATCGCCCCGCGTACGAGTGACTTCGAATCAGACGACAGCTATAACGATCCGCCCTTTGAATGTACCGCCGACTCTGATAACTCTTGcgctagtgaaaagttagatgttaAACCTCCAGCAGAAGACAGCCTTCTATCAGTTACCCCAGTGAAAATGGAGAAAGAAGAACAGCCCAGCGATGCAGCAGCTGTAAAAGACCCAATTTTAGTTGATATAGCAGTCAAAACCGAGCCCTTGGCCGAAGAAGTTAAGGATGAAGATCTCTCGGATATAAAGGAAGAAGATCTCCCTCCAATGAAGCTATGTCGGGTCGTTCTCGAAGCACCGAAACTACCGGaaaccaaaccaaaacaaaagcgACGTCGCACTGCTTTCCGCAAAAATCTTGTCATGTTCAAGAAAGACCGCATTTACCATTGCGAGTACTGCATTAAGGTCTATTACATCCGAAAGCCTTACGAGACCCACCTCCGTGAGCAGCACAAAAAAACCCACGATGAAATACGTGCGCTCTTCAAGAACGAAGAAGATGACATTCCCGCTGAGTACGTTCAACGCTGCCCGATATGCTCAAAGATCTACCTGAtggcaaaacgtctcaaaaccCACATAACGCATCATGGTCCCGATGGAAGTCTTACGCACAAATGCCCATGTTACTGCAAGTTCTATTTCCGGACAAGGGACGAGGCATTAGAACACGCCAAGTCCAAACACAAAGCCGCCATTTACTGCGACACATGCGGCAAGTATACACAATCTCCAGAGTCCCTCAAGATACACAAACGGACGCACTCTGAAACTCGAAAGCCGATAAATCGTTCTTTGATCTGTGACAAATGCGCCAAATCGTTCTCCAGTCGCACTTCTCTGACCGATCACACGCGATCGAACTGCGGGAAAGATCCATTTTATAACTGCGAGGTGTGCGATAAGAAGTTCACAACGGCGGGGATCCTGAAGACCCACTCACTGTTGCACAAGGACGAAACACCATTCGTATGTGATAAATGCGGAAAGTCTTTCAAAGTCAAGTCGCAGTACAAGTCCCATCTGAAGACCATGCATTCGGATAATAAGCCGTTCAAGTGCAATCAATGCCCAAAGGAATATCCCTACCGCGAAAGTCTACTCACACATATTGCTTCGCACACTGGAGTTAAGCGATTCGCCTGTGACGGTTGCGGCAAGCGCTTTACATGTATTTCAAATCTTCAAGCTCATCGGAAAGTGTACGCCAACACGTGTGGCTTGCAGCCGCTAAATTCAAAAGCCAGTCACTATATTGGAGTGCAGAAGGGTTGCTTGTTAATAGGAACCAAACCTAGTttttaa
- Protein Sequence
- MKDTVSTGTGGMLSSPSLTLVFYAFNFIEIMIAGEVSTMLVQIKTDKSGPKLVCPVCNKSLMSLNGYMTHMKRHEPPGGFCCNFCDDRFCLDELLKKHKDEKHKVLACQICHETFPNADAYRMHIQDIHKGVDRQMYVCEECGMEFKTSQAAKRHRETKCGEIKAHKCDECSIAFYTKYNLAEHKKIHRGDKKFCCSYCGKGFLNNGRLVIHERSHTGEKPYKCDVCGKCFAHRESFVTHTSIHTGVKLVVCKCCGARFSCHSNLIKHRRTRQDTCGQAIYDSTKERKRNGNSRIPASLMLSEIKIVQASKVLNPNEEPKNTRPSKVPKASKAPKTPKPPKAAKTLKTNLAKYASSSDTDEVIIKRPRRSQRTIGQPKIDEKPPIAPRTSDFESDDSYNDPPFECTADSDNSCASEKLDVKPPAEDSLLSVTPVKMEKEEQPSDAAAVKDPILVDIAVKTEPLAEEVKDEDLSDIKEEDLPPMKLCRVVLEAPKLPETKPKQKRRRTAFRKNLVMFKKDRIYHCEYCIKVYYIRKPYETHLREQHKKTHDEIRALFKNEEDDIPAEYVQRCPICSKIYLMAKRLKTHITHHGPDGSLTHKCPCYCKFYFRTRDEALEHAKSKHKAAIYCDTCGKYTQSPESLKIHKRTHSETRKPINRSLICDKCAKSFSSRTSLTDHTRSNCGKDPFYNCEVCDKKFTTAGILKTHSLLHKDETPFVCDKCGKSFKVKSQYKSHLKTMHSDNKPFKCNQCPKEYPYRESLLTHIASHTGVKRFACDGCGKRFTCISNLQAHRKVYANTCGLQPLNSKASHYIGVQKGCLLIGTKPSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724971;
- 90% Identity
- -
- 80% Identity
- -