Pmac058664.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:249490110-249497401[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.8 7.5e+02 3.4 0.5 2 23 179 201 178 201 0.95 2 19 0.01 4.2 10.5 3.7 2 19 243 260 242 263 0.92 3 19 1.2 5.2e+02 3.9 3.0 3 23 275 295 273 295 0.88 4 19 0.088 37 7.5 0.0 3 23 304 325 303 325 0.95 5 19 0.00058 0.24 14.4 2.2 2 23 332 353 331 353 0.97 6 19 0.14 59 6.9 4.8 1 23 359 382 359 382 0.97 7 19 0.00025 0.1 15.6 1.8 1 23 388 411 388 411 0.97 8 19 0.42 1.8e+02 5.4 0.0 1 20 420 439 420 441 0.95 9 19 0.003 1.3 12.2 0.7 1 23 458 480 458 480 0.97 10 19 0.023 9.4 9.4 1.6 1 23 485 507 485 507 0.98 11 19 0.12 50 7.1 0.4 1 23 523 547 523 547 0.96 12 19 1e-05 0.0042 20.0 0.9 1 21 553 573 553 574 0.97 13 19 0.0024 0.99 12.5 1.3 1 23 581 604 581 604 0.96 14 19 0.0034 1.4 12.0 0.9 3 23 611 631 609 632 0.94 15 19 2.4e-06 0.00099 21.9 1.2 2 23 636 658 635 658 0.96 16 19 1.8e-05 0.0075 19.1 0.3 1 23 664 687 664 687 0.95 17 19 0.011 4.4 10.4 0.7 1 23 693 715 693 715 0.97 18 19 0.0011 0.45 13.6 5.2 1 23 721 743 721 743 0.98 19 19 0.0014 0.57 13.2 0.4 1 23 749 774 749 774 0.94
Sequence Information
- Coding Sequence
- ATGGCTGAAAAATGTCTACGATGCAATGCCATACTGGAAGATGATTATCAATTGATATTCGATGAAATTGGTAGGGATCTGCAGCTGGACAGACTACTCGCGGAGCACTTTGGAATCACCATCGAGGAAGATTTCTCTGCAAGTCAGGCTCTATGCGAAGTCTGTGTTAACAAGCTTATTGAACTGTACGATCTAACTCAGCGAAATCAGGAACTAGATGTTGAAACAATTGCCGTAGAAAATGAAGCGATACAGGATTTTAAGGAAGAGGAACCTTTCGAAGAAGTGGAAATCAAtgaaaacgaatatgaaaatacaTTGGAGTTTGATTGTGAATATGAAGATATCGAATCGTTGGAAAATCTAAACGAAGCTCAAAATACAGAAGAACTCTTGGGATTTGACAGTGAAAAAAATCCAATTTGCCTGGAGAACGTTCAAAGTAAAGATGGACTGGAGAGTACTACACATCAAGATTATATTTCAAAGGTCATCAAAAGTGATTTAGAAGCCATCGAGTACAGTCAAAATACCGTCTGCAGGTTGTGTCAAGAAGTTTTAAAGAGTCATACGGCCGTAATCATGCATGTGTCGACAAACCATGAAGGTGAAGACAAGATGTACCCCTGCATTATCTGTAACTTGGATAGTTTCGATTCAACCAAAGATTTAGCACTGCACATTGTCCTGCAGCATTATGAAGTACACACTATCACCATTTATTGCATTTGTCCCGAATGTGataaaagattttcaaatttcattgAATATAATAAACATTCGTGCTACAAAGGCAACACCGGAAGTCGATTGTTACAAAATTGCGATACTTGCTCAAAGGAGTTTACTTCAAATAAAAGGTACCGCTTCCACTTACAATTCCATCTGGATAAACGACGCCCAAAAGCATGTTTTGTCTGTGATATTTTGTTTTCAGATGAAAACGATTACTTCGAGCACATAATGTACGCCCACGAGAAGGGAGACATATGGGTGTGTAAAAAATGCGATCGGATGTGTTCATCAAAAGAATTGTACGATAGCCACATGAAGATTCACAGTGCAATTCGTTCGTTTCACTGTGAATTTTGCTCAAAATCGTATTTATACAAACAGATGCTGACGAGTCATATAAAACGGCAACATACCGAAACAGACTGCTACCAATGCAAGATCTGTCGGAAAATCCTAGCGAGCAAGCATGTTCTGACGCGTCACATGCAGCTTATGCACTCTGAAGAAACAACTGAAAGTTTATACAAGTGCTCGGCGTGTGGACTGGTTGGAGCTTCGAAAGAGAACGCACAGGAACACATCGAGGAATATACTTGTCCAAATGCGAAACTCGACACGCAGTTCTTGCAAGTGGCGTTTGCTTGTGAATTTTGCGAGCATGCCTACGACTCTGTGGATAATTTAAAGGAGCATCGCAAGGTTCATGTTAAAAAGCTATTTACCTGTTGGATATGTAAGAGCGACTATACCGAATTCAAAAAGCTGAAAACTCACATCCTCACGCACACTGCCGTCGGGTCGATTCAAAAAACATTCCCAGTCAACAGGCACTACGTATGCGATTTTGATTCTTGCAACCAAACATATCTGACGTGGCCGTCACTACGCGCTCACAAAAATCGACACGCTTCCGACTCTAAGTTTACGTGTAACGTTTGCAGTCAACCATTTAGAACACAATCTCTTTTAAACCATCACCAAAGGGCGTACTGTCAAAACGAGGAGTACCCCTGCCAATTTTGTACAAGGATGTGTAGCTCGCAGATGTCGCTGGCGGTTCATATCGCACGGAAACACAACAACAATTTCATAGCTTGTCCGACCTGCCATTCGACCTATTCAACGGAAGAAGCTCTCAAGGAACACATCGACAACCACCACGTTGAACTGACGTGCAAACAATGTGGTAAGAGTACTAAAAACAAGCGGAACCTTGAAACCCATATACAAATGGTACATGCGAAAGTGAAGCGGTTTTTCTGTCCGACATGCAACAAGGGATACTACAACAATGGCGATCTAAAAGTCCACATGAAGGCGGCTCACTCCGAGCTGCACAAATACAAATGCCAAAATTGTGACTTTACATCAAGCTACGAGGTGTCATTTAATGCCCATGTTCTGTTACACGAATCCAAAAAGCCATTCAAGTGTGAAGAATGCTCCAGAGAATTCACCAGGAAGATGTGTTTTAAACTTCACCTATTACGCCATTCCGATGTCAAACCGTTCTGCTGTCCAGTCGAAGGTTGCGGCAGGAGTTTTGTAACGAGGGGGATCCTCAACACACATTTGCGTGACAATCATTTGGAGGCCGAAGGCAAGGTAAAGAAGGCTTCGCCACGACCAATGAAGCGAATAAGGCAAAGAGCAGCAAAACCAGTACGTAGCTCAAAAATTGTTAAATACGTGGTTGTCGATGACACCTCTGACAGCGCGCCTTTGGAAGCAGACAATCAAGAAGTCGATATAGTTTTTTACGATGCTGATCAAGGAATAGTACTCGAATGCATTGATGAGGACAATGATCTCATTGAAGACTTAAATGAAACTGACGTTGTTAATTAA
- Protein Sequence
- MAEKCLRCNAILEDDYQLIFDEIGRDLQLDRLLAEHFGITIEEDFSASQALCEVCVNKLIELYDLTQRNQELDVETIAVENEAIQDFKEEEPFEEVEINENEYENTLEFDCEYEDIESLENLNEAQNTEELLGFDSEKNPICLENVQSKDGLESTTHQDYISKVIKSDLEAIEYSQNTVCRLCQEVLKSHTAVIMHVSTNHEGEDKMYPCIICNLDSFDSTKDLALHIVLQHYEVHTITIYCICPECDKRFSNFIEYNKHSCYKGNTGSRLLQNCDTCSKEFTSNKRYRFHLQFHLDKRRPKACFVCDILFSDENDYFEHIMYAHEKGDIWVCKKCDRMCSSKELYDSHMKIHSAIRSFHCEFCSKSYLYKQMLTSHIKRQHTETDCYQCKICRKILASKHVLTRHMQLMHSEETTESLYKCSACGLVGASKENAQEHIEEYTCPNAKLDTQFLQVAFACEFCEHAYDSVDNLKEHRKVHVKKLFTCWICKSDYTEFKKLKTHILTHTAVGSIQKTFPVNRHYVCDFDSCNQTYLTWPSLRAHKNRHASDSKFTCNVCSQPFRTQSLLNHHQRAYCQNEEYPCQFCTRMCSSQMSLAVHIARKHNNNFIACPTCHSTYSTEEALKEHIDNHHVELTCKQCGKSTKNKRNLETHIQMVHAKVKRFFCPTCNKGYYNNGDLKVHMKAAHSELHKYKCQNCDFTSSYEVSFNAHVLLHESKKPFKCEECSREFTRKMCFKLHLLRHSDVKPFCCPVEGCGRSFVTRGILNTHLRDNHLEAEGKVKKASPRPMKRIRQRAAKPVRSSKIVKYVVVDDTSDSAPLEADNQEVDIVFYDADQGIVLECIDEDNDLIEDLNETDVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -