Pmac033857.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:5393296-5397486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5e-05 0.01 18.7 1.0 1 23 18 40 18 40 0.98 2 14 0.038 16 8.7 1.4 1 23 85 107 85 107 0.91 3 14 8.2e-06 0.0034 20.2 4.2 1 23 113 135 113 135 0.97 4 14 1.3e-05 0.0054 19.6 2.6 1 23 141 163 141 163 0.98 5 14 7.6e-06 0.0032 20.3 1.6 1 23 169 191 169 191 0.98 6 14 0.037 15 8.7 0.7 2 23 256 277 255 277 0.96 7 14 0.33 1.4e+02 5.7 6.2 1 23 282 304 282 304 0.97 8 14 6.3e-07 0.00026 23.7 0.3 1 23 311 334 311 334 0.98 9 14 0.00019 0.078 16.0 0.2 1 23 340 362 340 362 0.98 10 14 0.14 57 6.9 5.7 2 19 369 386 368 390 0.88 11 14 0.0002 0.085 15.8 4.1 1 23 439 461 439 461 0.97 12 14 2.7e-06 0.0011 21.7 5.6 1 23 467 489 467 489 0.99 13 14 2.6e-07 0.00011 25.0 1.0 1 23 495 517 495 517 0.99 14 14 0.00044 0.18 14.8 2.2 1 23 523 545 523 545 0.98
Sequence Information
- Coding Sequence
- ATGACTGTATTGAGACGCCATATTGCTACTGTACACTCGAAAGACAGGAACTTTGAATGTGGCATCTGCCAACTAAAATTTAAGACTGCATTGCAACTTGAACGGCACAAAAAAACTCATCTGGATGAATCTGAACGACCTAGATGGACGAAACAGAGAAGAAAGAGAATCCCATGTGATGTATGCGATAAGATCTCTTTGGGAAGAAGAGCGCACTTGGATCACATGACAATACACACCGGCGAGAGACCATACAAATGCACGATATGTGATATGGCCTACCGAACGGATGCCGGATTGAAATGTCACACGGTCAAACATTCAAATATACGCCCTCACGAATGTAAACATTGTGGCAAAACATTTTGGCGAAAGACTAACCTCAATATACACATGTCTGTTCACGAGAAAACTAGGCAACACGTTTGCgaaatttgcaaaaaggcgtTTAAGTTTAAAATGAGTTTGGCGCAACACTTAAGAAAACATGCGGGCGTGATGCCTTATATGTGTAATACGTGCCCGCAAAGCTTCATATATCAAAATCAACTCAAGCAACATCTTAAGAGTCATACAAACACAACTAACACTGAGGTGCAGGAACAGGATATACCGGAAGCGGCGATTAGCGATATAACGAAGAGTAAATTCAAAAATGATTCGCAAATAGGTTCCTACGTTTATCAAATCACTGAAATTACACCAGATAATGTGGAAGTTAAGCAAGAAAAAGAGACGATCAGAAAGGCAAGAACGATTCAAATCGAATGTGAAAATTGTGCAGAAGTGTTTCCAACAAAATGCAAATACTTTGAACATGTGAAGGAGCACGGTAACGAAAGGTTCCACTGCTTTTTCTGTGACAAATGGTTCAGtagaaaatatatattcaatCAGCACATGAAGAATCATTCCGGTGAGACATCCGCGTTCCCTTGTGACATTTGTGAAAAAAGTTACACAAATTATTGGAACTTGGCACGTCACACCCGAACAGCGCATAATGGCGAAAGGAAATTTCAATGTGCTGAGTGCAATGATAGTTTTAGTAGAGCAGACGTCTTAAAGATGCATATGGCTAAGCACTCCGATGAGAGAAACGTTGAGTGTAACTTCTGCAATAAGAAATTTAAGACGAATCAGAACCTGTTCTTTCATAAGAAATGCCATCTGGATAAATCTGAGCGACCGAAAAAGTCAGTTAGAACAAAACCAACCGTAATCGAAGTGTACCTGTGTGATGTTTGCAAGAAAATATCCCATCACAGAACAACTCATTTGAATCACTTAAGAACGCATACTGGAGAAAAACCATTCGAATGTAGCTGCTGCGATAAGTCCTTCCGAACGAGCAGCGCTAGAAGAAATCACATGTTAACCCACACAGATCAACGTCCGTATAAGtgcaaaatttgtgatttatcCTTTAGACAAAACTGCCACTTGAAGTCTCATATGCTTATTCATGACGGAGTTAAGCGTTATGTATGTGATTTTTGTCAAAAACCGTTTACTATGAAAAGCAATTTAATGGTCCATTTGAGGACGCATACCGGTGAGATGCCTTATGAATGCAATATGTGCCCGCAAAAGTTCGCTCATCTTAATCAAGTTAAGCGCCACAAATTGAGTCACATCAACGAGGATGGAGAACAAAATAGTACCTGTAATGAGATTGCAAATGAAATGGAGACTGATTTTAATGattcacaaataagtttgtTCGAAGATGACATTATTGAAATAACGAGCTGTAAATATGATTCTGATCCGGGCGGTGTTGATATATCCAATTGTATAAAAGAACACTTTTGA
- Protein Sequence
- MTVLRRHIATVHSKDRNFECGICQLKFKTALQLERHKKTHLDESERPRWTKQRRKRIPCDVCDKISLGRRAHLDHMTIHTGERPYKCTICDMAYRTDAGLKCHTVKHSNIRPHECKHCGKTFWRKTNLNIHMSVHEKTRQHVCEICKKAFKFKMSLAQHLRKHAGVMPYMCNTCPQSFIYQNQLKQHLKSHTNTTNTEVQEQDIPEAAISDITKSKFKNDSQIGSYVYQITEITPDNVEVKQEKETIRKARTIQIECENCAEVFPTKCKYFEHVKEHGNERFHCFFCDKWFSRKYIFNQHMKNHSGETSAFPCDICEKSYTNYWNLARHTRTAHNGERKFQCAECNDSFSRADVLKMHMAKHSDERNVECNFCNKKFKTNQNLFFHKKCHLDKSERPKKSVRTKPTVIEVYLCDVCKKISHHRTTHLNHLRTHTGEKPFECSCCDKSFRTSSARRNHMLTHTDQRPYKCKICDLSFRQNCHLKSHMLIHDGVKRYVCDFCQKPFTMKSNLMVHLRTHTGEMPYECNMCPQKFAHLNQVKRHKLSHINEDGEQNSTCNEIANEMETDFNDSQISLFEDDIIEITSCKYDSDPGGVDISNCIKEHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -